Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QNH30_RS18050 Genome accession   NZ_CP126082
Coordinates   3493688..3494410 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3488688..3499410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS18015 (QNH30_18015) fliW 3488827..3489258 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  QNH30_RS18020 (QNH30_18020) yviE 3489279..3489854 (-) 576 WP_041850476.1 DUF6470 family protein -
  QNH30_RS18025 (QNH30_18025) flgL 3489901..3490797 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QNH30_RS18030 (QNH30_18030) flgK 3490808..3492331 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  QNH30_RS18035 (QNH30_18035) flgN 3492350..3492832 (-) 483 WP_014481048.1 flagellar protein FlgN -
  QNH30_RS18040 (QNH30_18040) flgM 3492848..3493114 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH30_RS18045 (QNH30_18045) yvyF 3493195..3493614 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QNH30_RS18050 (QNH30_18050) comFC 3493688..3494410 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QNH30_RS18055 (QNH30_18055) comFB 3494374..3494670 (-) 297 WP_003227989.1 late competence protein ComFB -
  QNH30_RS18060 (QNH30_18060) comFA 3494730..3496121 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  QNH30_RS18065 (QNH30_18065) fakBA 3496227..3497072 (-) 846 WP_003227986.1 DegV family protein -
  QNH30_RS18070 (QNH30_18070) degU 3497170..3497859 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNH30_RS18075 (QNH30_18075) degS 3497942..3499099 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=834858 QNH30_RS18050 WP_014481051.1 3493688..3494410(-) (comFC) [Bacillus subtilis strain C1_13]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=834858 QNH30_RS18050 WP_014481051.1 3493688..3494410(-) (comFC) [Bacillus subtilis strain C1_13]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992