Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH30_RS12620 Genome accession   NZ_CP126082
Coordinates   2448483..2449553 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain C1_13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2443483..2454553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS12575 (QNH30_12575) tapA 2443962..2444723 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  QNH30_RS12580 (QNH30_12580) yqzG 2444995..2445321 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QNH30_RS12585 (QNH30_12585) spoIIT 2445363..2445542 (-) 180 WP_003230176.1 YqzE family protein -
  QNH30_RS12590 (QNH30_12590) comGG 2445613..2445987 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  QNH30_RS12595 (QNH30_12595) comGF 2445988..2446371 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  QNH30_RS12600 (QNH30_12600) comGE 2446397..2446744 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QNH30_RS12605 (QNH30_12605) comGD 2446728..2447159 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  QNH30_RS12610 (QNH30_12610) comGC 2447149..2447445 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QNH30_RS12615 (QNH30_12615) comGB 2447459..2448496 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  QNH30_RS12620 (QNH30_12620) comGA 2448483..2449553 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QNH30_RS12625 (QNH30_12625) corA 2449964..2450917 (-) 954 WP_029317911.1 magnesium transporter CorA -
  QNH30_RS12630 (QNH30_12630) yqhB 2451060..2452388 (+) 1329 WP_041850018.1 hemolysin family protein -
  QNH30_RS12635 (QNH30_12635) rsbRD 2452441..2453277 (-) 837 WP_041850019.1 RsbT co-antagonist protein RsbRD -
  QNH30_RS12645 (QNH30_12645) mgsR 2453501..2453881 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  QNH30_RS12650 (QNH30_12650) yqgY 2454113..2454358 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=834839 QNH30_RS12620 WP_004399124.1 2448483..2449553(-) (comGA) [Bacillus subtilis strain C1_13]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=834839 QNH30_RS12620 WP_004399124.1 2448483..2449553(-) (comGA) [Bacillus subtilis strain C1_13]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1