Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNH30_RS12560 Genome accession   NZ_CP126082
Coordinates   2442129..2442464 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain C1_13     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2437129..2447464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS12540 (QNH30_12540) gcvT 2437722..2438810 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  QNH30_RS12545 (QNH30_12545) yqhH 2439251..2440924 (+) 1674 WP_041850014.1 SNF2-related protein -
  QNH30_RS12550 (QNH30_12550) yqhG 2440945..2441739 (+) 795 WP_003230200.1 YqhG family protein -
  QNH30_RS12555 (QNH30_12555) sinI 2441922..2442095 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  QNH30_RS12560 (QNH30_12560) sinR 2442129..2442464 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QNH30_RS12565 (QNH30_12565) tasA 2442557..2443342 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  QNH30_RS12570 (QNH30_12570) sipW 2443406..2443978 (-) 573 WP_003246088.1 signal peptidase I SipW -
  QNH30_RS12575 (QNH30_12575) tapA 2443962..2444723 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  QNH30_RS12580 (QNH30_12580) yqzG 2444995..2445321 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QNH30_RS12585 (QNH30_12585) spoIIT 2445363..2445542 (-) 180 WP_003230176.1 YqzE family protein -
  QNH30_RS12590 (QNH30_12590) comGG 2445613..2445987 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  QNH30_RS12595 (QNH30_12595) comGF 2445988..2446371 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  QNH30_RS12600 (QNH30_12600) comGE 2446397..2446744 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QNH30_RS12605 (QNH30_12605) comGD 2446728..2447159 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  QNH30_RS12610 (QNH30_12610) comGC 2447149..2447445 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=834832 QNH30_RS12560 WP_003226345.1 2442129..2442464(+) (sinR) [Bacillus subtilis strain C1_13]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=834832 QNH30_RS12560 WP_003226345.1 2442129..2442464(+) (sinR) [Bacillus subtilis strain C1_13]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1