Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNH30_RS05605 Genome accession   NZ_CP126082
Coordinates   1084501..1085079 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_13     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079501..1090079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS05585 (QNH30_05585) hemAT 1080012..1081310 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  QNH30_RS05590 (QNH30_05590) yhfW 1081449..1082978 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  QNH30_RS05595 (QNH30_05595) yhxC 1083090..1083947 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  QNH30_RS05600 (QNH30_05600) yhzC 1083975..1084208 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QNH30_RS05605 (QNH30_05605) comK 1084501..1085079 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  QNH30_RS05610 (QNH30_05610) yhxD 1085126..1086025 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  QNH30_RS05615 (QNH30_05615) yhjA 1086242..1086511 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  QNH30_RS05620 (QNH30_05620) yhjB 1086555..1088024 (-) 1470 WP_029317574.1 sodium:solute symporter -
  QNH30_RS05625 (QNH30_05625) yhjC 1088021..1088221 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QNH30_RS05630 (QNH30_05630) - 1088420..1088791 (-) 372 WP_014476361.1 hypothetical protein -
  QNH30_RS05635 (QNH30_05635) yhjE 1088943..1089566 (+) 624 WP_010886465.1 VTT domain-containing protein -
  QNH30_RS05640 (QNH30_05640) lepB 1089568..1090074 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=834808 QNH30_RS05605 WP_029317573.1 1084501..1085079(+) (comK) [Bacillus subtilis strain C1_13]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=834808 QNH30_RS05605 WP_029317573.1 1084501..1085079(+) (comK) [Bacillus subtilis strain C1_13]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995