Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QNH35_RS11930 Genome accession   NZ_CP126081
Coordinates   2327682..2328485 (-) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain B2_10     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2322682..2333485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS11910 (QNH35_11910) - 2324891..2325127 (+) 237 WP_003215815.1 DUF2627 domain-containing protein -
  QNH35_RS11915 (QNH35_11915) - 2325162..2325899 (-) 738 WP_044141004.1 glycerophosphodiester phosphodiesterase -
  QNH35_RS11920 (QNH35_11920) - 2326125..2327225 (-) 1101 WP_044141003.1 Rap family tetratricopeptide repeat protein -
  QNH35_RS11925 (QNH35_11925) - 2327213..2327410 (-) 198 WP_034661994.1 hypothetical protein -
  QNH35_RS11930 (QNH35_11930) spo0A 2327682..2328485 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  QNH35_RS11935 (QNH35_11935) spoIVB 2328771..2330048 (-) 1278 WP_003215755.1 SpoIVB peptidase -
  QNH35_RS11940 (QNH35_11940) recN 2330247..2331983 (-) 1737 WP_044141001.1 DNA repair protein RecN Machinery gene
  QNH35_RS11945 (QNH35_11945) argR 2332017..2332466 (-) 450 WP_012010523.1 transcriptional regulator ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=834761 QNH35_RS11930 WP_003215740.1 2327682..2328485(-) (spo0A) [Bacillus pumilus strain B2_10]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=834761 QNH35_RS11930 WP_003215740.1 2327682..2328485(-) (spo0A) [Bacillus pumilus strain B2_10]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTGCTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGCCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAA
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACAACGATT
ATTCATGAGATTGGCGTCCCGGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCAATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCAGAATTTATCGCAATGGTGGCTGATCGTCTGCGCCTAGAGCATAGGGCAAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884