Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH35_RS09600 Genome accession   NZ_CP126081
Coordinates   1892861..1893241 (+) Length   126 a.a.
NCBI ID   WP_283924523.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1887861..1898241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS09590 (QNH35_09590) - 1888335..1891478 (+) 3144 WP_283924509.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  QNH35_RS09595 (QNH35_09595) - 1891674..1892582 (+) 909 WP_283924510.1 trypsin-like serine protease -
  QNH35_RS09600 (QNH35_09600) nucA/comI 1892861..1893241 (+) 381 WP_283924523.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH35_RS09605 (QNH35_09605) - 1893389..1894237 (+) 849 WP_044141412.1 STAS domain-containing protein -
  QNH35_RS09610 (QNH35_09610) - 1894271..1894813 (-) 543 WP_113767724.1 IseA DL-endopeptidase inhibitor family protein -
  QNH35_RS09615 (QNH35_09615) - 1895108..1895542 (+) 435 WP_113767725.1 hypothetical protein -
  QNH35_RS09620 (QNH35_09620) lexA 1895588..1896208 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  QNH35_RS09625 (QNH35_09625) yneA 1896368..1896679 (+) 312 WP_044141409.1 cell division suppressor protein YneA -
  QNH35_RS09630 (QNH35_09630) - 1896697..1897344 (+) 648 WP_003211322.1 recombinase family protein -
  QNH35_RS09635 (QNH35_09635) - 1897414..1897644 (+) 231 WP_039167715.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13828.53 Da        Isoelectric Point: 8.4984

>NTDB_id=834759 QNH35_RS09600 WP_283924523.1 1892861..1893241(+) (nucA/comI) [Bacillus pumilus strain B2_10]
MVTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQKSLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWTGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=834759 QNH35_RS09600 WP_283924523.1 1892861..1893241(+) (nucA/comI) [Bacillus pumilus strain B2_10]
ATGGTCACGCTGTTAGGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGATACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCCGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAAAATCATTAAAAGGCATTCCGACTAAACCCGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCGTCTGATAATAGGGGAGCGGGCTCATG
GACCGGACACCAGATGAGCGGGTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.143

94.444

0.54