Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QNH35_RS08625 Genome accession   NZ_CP126081
Coordinates   1693689..1694591 (+) Length   300 a.a.
NCBI ID   WP_283924485.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1688689..1699591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS08605 (QNH35_08605) - 1689355..1691091 (+) 1737 WP_268508243.1 glycosyltransferase -
  QNH35_RS08610 (QNH35_08610) - 1691088..1691363 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  QNH35_RS08615 (QNH35_08615) sucC 1691540..1692700 (+) 1161 WP_283924484.1 ADP-forming succinate--CoA ligase subunit beta -
  QNH35_RS08620 (QNH35_08620) sucD 1692723..1693625 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  QNH35_RS08625 (QNH35_08625) dprA 1693689..1694591 (+) 903 WP_283924485.1 DNA-processing protein DprA Machinery gene
  QNH35_RS08630 (QNH35_08630) topA 1694785..1696860 (+) 2076 WP_044141928.1 type I DNA topoisomerase -
  QNH35_RS08635 (QNH35_08635) trmFO 1696931..1698235 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH35_RS08640 (QNH35_08640) xerC 1698298..1699215 (+) 918 WP_283924486.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34132.66 Da        Isoelectric Point: 9.4461

>NTDB_id=834755 QNH35_RS08625 WP_283924485.1 1693689..1694591(+) (dprA) [Bacillus pumilus strain B2_10]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPKLYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNVSYLNKEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=834755 QNH35_RS08625 WP_283924485.1 1693689..1694591(+) (dprA) [Bacillus pumilus strain B2_10]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTAAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAGGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTGTCATATTTAAATAAAGAAAAAAGTTTAGGTGTAGTAGGCACGCGTGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAACTTGTTAAGGAAGATTGGATGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCATTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGTTTAATTAGTGCGCTGACAAGTGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

38.542

96

0.37