Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QNH35_RS07690 Genome accession   NZ_CP126081
Coordinates   1511185..1511766 (+) Length   193 a.a.
NCBI ID   WP_268484881.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506185..1516766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS07660 (QNH35_07660) dapD 1506307..1507017 (+) 711 WP_044142056.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QNH35_RS07665 (QNH35_07665) - 1507052..1508230 (+) 1179 WP_283924459.1 N-acetyldiaminopimelate deacetylase -
  QNH35_RS07670 (QNH35_07670) - 1508281..1508523 (+) 243 WP_003211408.1 YkuS family protein -
  QNH35_RS07675 (QNH35_07675) - 1508553..1509359 (-) 807 WP_283924460.1 mechanosensitive ion channel family protein -
  QNH35_RS07680 (QNH35_07680) ahpA 1509631..1510173 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  QNH35_RS07685 (QNH35_07685) - 1510256..1510714 (+) 459 WP_283924461.1 TlpA disulfide reductase family protein -
  QNH35_RS07690 (QNH35_07690) rok 1511185..1511766 (+) 582 WP_268484881.1 transcriptional regulator Rok Regulator
  QNH35_RS07695 (QNH35_07695) - 1511817..1512734 (-) 918 WP_268484879.1 sigmaE regulated sporulation protein -
  QNH35_RS07700 (QNH35_07700) - 1512819..1513400 (+) 582 WP_268484877.1 molybdenum cofactor guanylyltransferase -
  QNH35_RS07705 (QNH35_07705) - 1513430..1514446 (+) 1017 WP_113767610.1 thiazole biosynthesis adenylyltransferase ThiF -
  QNH35_RS07710 (QNH35_07710) glp 1514456..1515733 (+) 1278 WP_283924462.1 gephyrin-like molybdotransferase Glp -
  QNH35_RS07715 (QNH35_07715) mobB 1515715..1516239 (+) 525 WP_283924463.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  QNH35_RS07720 (QNH35_07720) - 1516236..1516727 (+) 492 WP_113767611.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21775.74 Da        Isoelectric Point: 9.7309

>NTDB_id=834753 QNH35_RS07690 WP_268484881.1 1511185..1511766(+) (rok) [Bacillus pumilus strain B2_10]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASTLGTGQLTGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=834753 QNH35_RS07690 WP_268484881.1 1511185..1511766(+) (rok) [Bacillus pumilus strain B2_10]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATTCTGCATCAACTTTAGGAACAGGACAGCTAACCGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCCCGACCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.421

98.446

0.772