Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QNH35_RS00260 Genome accession   NZ_CP126081
Coordinates   48621..48911 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43621..53911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS00220 (QNH35_00220) - 43656..43985 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  QNH35_RS00225 (QNH35_00225) - 43998..44438 (+) 441 WP_044140388.1 DUF327 family protein -
  QNH35_RS00230 (QNH35_00230) holB 44450..45439 (+) 990 WP_065097669.1 DNA polymerase III subunit delta' -
  QNH35_RS00235 (QNH35_00235) - 45442..46269 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  QNH35_RS00240 (QNH35_00240) yabA 46284..46637 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  QNH35_RS00245 (QNH35_00245) - 46693..47436 (+) 744 WP_003217966.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QNH35_RS00250 (QNH35_00250) - 47423..47719 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  QNH35_RS00255 (QNH35_00255) rsmI 47697..48575 (+) 879 WP_003217903.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QNH35_RS00260 (QNH35_00260) abrB 48621..48911 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QNH35_RS00265 (QNH35_00265) metG 49432..51432 (+) 2001 WP_003217934.1 methionine--tRNA ligase -
  QNH35_RS00270 (QNH35_00270) - 51514..52281 (+) 768 WP_003217927.1 TatD family hydrolase -
  QNH35_RS00275 (QNH35_00275) - 52526..53728 (+) 1203 WP_034620901.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=834731 QNH35_RS00260 WP_087975202.1 48621..48911(-) (abrB) [Bacillus pumilus strain B2_10]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=834731 QNH35_RS00260 WP_087975202.1 48621..48911(-) (abrB) [Bacillus pumilus strain B2_10]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938