Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8570_RS00195 Genome accession   NZ_AP026932
Coordinates   36426..37196 (+) Length   256 a.a.
NCBI ID   WP_000616157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701549     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31426..42196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8570_RS00180 (PC1528_00290) - 33481..33918 (+) 438 WP_000076479.1 CoA-binding protein -
  R8570_RS00185 (PC1528_00300) - 34101..35111 (-) 1011 WP_000009157.1 YeiH family protein -
  R8570_RS00190 (PC1528_00320) - 35260..36429 (+) 1170 WP_000366343.1 pyridoxal phosphate-dependent aminotransferase -
  R8570_RS00195 (PC1528_00330) recO 36426..37196 (+) 771 WP_000616157.1 DNA repair protein RecO Machinery gene
  R8570_RS00200 (PC1528_00340) plsX 37193..38185 (+) 993 WP_000717457.1 phosphate acyltransferase PlsX -
  R8570_RS00205 (PC1528_00350) - 38191..38424 (+) 234 WP_000136447.1 acyl carrier protein -
  R8570_RS00210 (PC1528_00360) - 38461..38760 (+) 300 Protein_34 transposase family protein -
  R8570_RS00215 (PC1528_00370) cipB 38963..39121 (+) 159 WP_001093073.1 bacteriocin class II family protein Regulator
  R8570_RS00220 - 39124..39249 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R8570_RS00225 (PC1528_00380) comA 39836..41989 (+) 2154 WP_000668291.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29735.24 Da        Isoelectric Point: 5.1580

>NTDB_id=83473 R8570_RS00195 WP_000616157.1 36426..37196(+) (recO) [Streptococcus pneumoniae strain PZ900701549]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=83473 R8570_RS00195 WP_000616157.1 36426..37196(+) (recO) [Streptococcus pneumoniae strain PZ900701549]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992