Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JLC71_RS15170 Genome accession   NZ_AP024094
Coordinates   3141058..3142482 (+) Length   474 a.a.
NCBI ID   WP_200916434.1    Uniprot ID   A0A7I8EEH9
Organism   Jeongeupia sp. HS-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3136058..3147482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLC71_RS15145 (JHS3_29510) - 3137610..3138587 (+) 978 WP_200916429.1 SIS domain-containing protein -
  JLC71_RS15150 (JHS3_29520) - 3138621..3139136 (+) 516 WP_200916430.1 HAD family hydrolase -
  JLC71_RS15155 (JHS3_29530) lptC 3139138..3139719 (+) 582 WP_200916431.1 LPS export ABC transporter periplasmic protein LptC -
  JLC71_RS15160 (JHS3_29540) lptA 3139694..3140317 (+) 624 WP_200916432.1 lipopolysaccharide transport periplasmic protein LptA -
  JLC71_RS15165 (JHS3_29550) lptB 3140314..3141048 (+) 735 WP_200916433.1 LPS export ABC transporter ATP-binding protein -
  JLC71_RS15170 (JHS3_29560) rpoN/rpoN1 3141058..3142482 (+) 1425 WP_200916434.1 RNA polymerase factor sigma-54 Machinery gene
  JLC71_RS15175 (JHS3_29570) hpf 3142510..3142836 (+) 327 WP_200916435.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JLC71_RS15180 (JHS3_29580) - 3142950..3143417 (+) 468 WP_200916436.1 PTS sugar transporter subunit IIA -
  JLC71_RS15185 (JHS3_29590) hprK 3143632..3144576 (+) 945 WP_200916437.1 HPr(Ser) kinase/phosphatase -
  JLC71_RS15190 (JHS3_29600) rapZ 3144595..3145449 (+) 855 WP_200916438.1 RNase adapter RapZ -
  JLC71_RS15195 (JHS3_29610) - 3145491..3145814 (+) 324 WP_236250913.1 NusG domain II-containing protein -
  JLC71_RS15200 (JHS3_29620) - 3145819..3146316 (+) 498 WP_236250914.1 Gx transporter family protein -
  JLC71_RS15205 (JHS3_29630) - 3146313..3146912 (+) 600 WP_200916439.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 52393.17 Da        Isoelectric Point: 4.6365

>NTDB_id=83471 JLC71_RS15170 WP_200916434.1 3141058..3142482(+) (rpoN/rpoN1) [Jeongeupia sp. HS-3]
MKQSLQLRLSQQLNLTPQLQQSIKLLQLSTLDFQQEVERFLAENPLLERGEDNHASSEGEGSAEAPTENSSSDDAPASES
AFDNDDWGWEGSGGGARGSGDDDDDFDPASNIARELTLREHLLAQAGLLPIPLRDRAALTWLIDALDDDGFLTQPLEEIL
ALLPAELAGEFEFESDDLAIALARLKQLEPLGVGAKDMAESLALQLAVLPLSDARQLALGIVRDSLDLLAARDYTRLKRR
LKCDETELKAAQALIVSLNPRPGAQWSDESSHYVVADVLVSKLKGQWRVRLNDAARPKLRVNRMYADILQRSDGGSMARE
LQEAKWLVKSVQQRFDTILRVGQAIVDKQSAFFEHGEIAMRPLVLRDIASELDLHESTVSRVTTQKYMLTPRGIFEYKYF
FGSHVETEAGGEASATAIKAQIRQLIQQEDKQKPLSDSAIADALAGQGVVVARRTVAKYREAMQISPVNLRKCL

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=83471 JLC71_RS15170 WP_200916434.1 3141058..3142482(+) (rpoN/rpoN1) [Jeongeupia sp. HS-3]
ATGAAGCAATCGCTGCAACTTCGCCTTTCGCAACAGCTCAATCTGACGCCGCAGCTGCAGCAGTCGATCAAGCTGCTGCA
GTTGTCGACGCTTGATTTCCAACAGGAGGTCGAGCGCTTCCTGGCCGAAAACCCGCTGCTTGAGCGCGGCGAAGACAATC
ACGCCTCAAGCGAAGGCGAAGGTAGTGCCGAAGCGCCGACCGAGAACAGCAGCAGCGACGATGCGCCGGCGAGCGAGTCG
GCGTTCGACAACGACGACTGGGGCTGGGAAGGCAGTGGCGGCGGCGCGCGTGGCAGCGGTGATGACGACGATGATTTCGA
CCCCGCCAGCAACATCGCCCGCGAGCTGACCCTGCGCGAGCATCTGCTGGCGCAAGCCGGGCTGCTGCCGATTCCGTTGC
GGGATCGCGCCGCGCTGACCTGGTTGATCGACGCGCTCGACGACGACGGCTTTCTGACCCAGCCGCTTGAGGAAATCCTC
GCGCTGTTGCCGGCGGAACTTGCCGGCGAGTTCGAGTTCGAATCCGATGACCTTGCGATTGCCCTGGCGCGGCTCAAGCA
GCTCGAACCGCTGGGCGTCGGCGCGAAAGATATGGCCGAGTCGCTGGCTTTGCAACTGGCGGTCTTGCCACTCTCTGACG
CACGTCAACTTGCGTTGGGGATTGTGCGGGACAGCCTCGATTTGCTCGCGGCACGGGACTACACTAGGTTGAAACGTCGC
CTGAAATGCGATGAAACGGAGCTGAAGGCAGCGCAAGCGCTGATCGTCAGCCTGAATCCGCGGCCAGGCGCGCAATGGAG
CGACGAATCGTCGCATTATGTTGTCGCTGATGTACTGGTCAGCAAGCTCAAGGGGCAGTGGCGAGTGCGCTTGAACGACG
CGGCCAGACCCAAGCTCAGGGTCAATCGGATGTACGCCGATATCCTGCAACGCAGTGATGGCGGTTCGATGGCCCGCGAG
TTGCAGGAAGCCAAATGGCTGGTCAAGAGTGTCCAGCAGCGTTTCGACACCATCCTGCGCGTCGGTCAGGCGATCGTTGA
TAAGCAAAGCGCGTTCTTTGAACATGGTGAAATCGCGATGCGGCCCTTGGTGCTGCGCGATATTGCCTCCGAGCTTGATC
TGCACGAATCCACCGTTTCGCGGGTGACCACCCAGAAGTACATGCTCACGCCGCGCGGAATTTTCGAGTACAAGTATTTC
TTCGGCAGCCATGTCGAAACCGAAGCCGGCGGGGAAGCTTCCGCTACTGCGATCAAGGCGCAGATTCGCCAGCTGATCCA
GCAAGAGGACAAGCAAAAGCCTTTATCGGATAGTGCCATCGCTGATGCGTTGGCGGGGCAAGGGGTCGTGGTTGCGCGAC
GAACCGTTGCCAAGTACAGGGAGGCGATGCAAATCTCTCCCGTCAATCTGCGCAAATGCCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-472)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8EEH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.968

100

0.574

Multiple sequence alignment