Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH36_RS16630 Genome accession   NZ_CP126080
Coordinates   3287375..3288424 (-) Length   349 a.a.
NCBI ID   WP_283903834.1    Uniprot ID   -
Organism   Mesobacillus sp. AQ2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3282375..3293424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS16585 (QNH36_16585) - 3282842..3283633 (+) 792 WP_144476312.1 YqhG family protein -
  QNH36_RS16590 (QNH36_16590) - 3283706..3283891 (-) 186 WP_144476310.1 YqzE family protein -
  QNH36_RS16595 (QNH36_16595) - 3283933..3284433 (-) 501 WP_251540860.1 shikimate kinase -
  QNH36_RS16600 (QNH36_16600) comGG 3284449..3284790 (-) 342 WP_144476305.1 competence type IV pilus minor pilin ComGG -
  QNH36_RS16605 (QNH36_16605) comGF 3284820..3285329 (-) 510 WP_144476302.1 competence type IV pilus minor pilin ComGF -
  QNH36_RS16610 (QNH36_16610) - 3285247..3285582 (-) 336 WP_144476299.1 hypothetical protein -
  QNH36_RS16615 (QNH36_16615) comGD 3285566..3286018 (-) 453 WP_251540862.1 competence type IV pilus minor pilin ComGD -
  QNH36_RS16620 (QNH36_16620) comGC 3286015..3286320 (-) 306 WP_283903832.1 competence type IV pilus major pilin ComGC -
  QNH36_RS16625 (QNH36_16625) comGB 3286357..3287388 (-) 1032 WP_283903833.1 competence type IV pilus assembly protein ComGB -
  QNH36_RS16630 (QNH36_16630) comGA 3287375..3288424 (-) 1050 WP_283903834.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH36_RS16640 (QNH36_16640) - 3288846..3289199 (-) 354 WP_144476285.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH36_RS16645 (QNH36_16645) - 3289393..3290094 (+) 702 WP_144476282.1 helix-turn-helix domain-containing protein -
  QNH36_RS16650 (QNH36_16650) - 3290174..3290419 (+) 246 WP_079509735.1 DUF2626 domain-containing protein -
  QNH36_RS16655 (QNH36_16655) - 3290476..3291567 (-) 1092 WP_283903835.1 SAM-dependent methyltransferase -
  QNH36_RS16660 (QNH36_16660) - 3291738..3292373 (-) 636 WP_283903836.1 MBL fold metallo-hydrolase -
  QNH36_RS16665 (QNH36_16665) - 3292524..3293003 (+) 480 WP_283903837.1 hypothetical protein -
  QNH36_RS16670 (QNH36_16670) - 3293119..3293292 (+) 174 WP_144476271.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39251.01 Da        Isoelectric Point: 7.5053

>NTDB_id=834707 QNH36_RS16630 WP_283903834.1 3287375..3288424(-) (comGA) [Mesobacillus sp. AQ2]
MAENILKDALKSGASDIHIIPRERDTLVKFRLGNQLLPRYTLEQVDCERLISHFKFTASMDIGEKRRPQSGAFTYQDHDR
KIGLRISTLPAYQNESMVIRLLPEQNHIPSYQISLFPSTSKKLISLLKHAHGLIIFTGPTGSGKTTTLYSMLSETSEMVN
RNVITLEDPIEKPSESVLQVQVNERAGISYSAGLKAILRHDPDIIMVGEIRDKETAETAIRASLTGHLVLTTMHTRDARG
AIYRLIEFGINWLEIEQTLIAVTAQRLVELTCPYCEDACSPFCYSSGSGKRGNVFEILTGRDLSAVLKEAKGEHQNYHYK
TLKDAIKKGIALGFIKESEYQRWVLNEGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=834707 QNH36_RS16630 WP_283903834.1 3287375..3288424(-) (comGA) [Mesobacillus sp. AQ2]
TTGGCGGAAAATATTTTAAAAGATGCTTTAAAGAGCGGCGCTTCGGACATTCATATTATCCCGCGAGAGAGAGACACCCT
GGTAAAATTCAGGCTTGGCAATCAGCTGCTGCCCCGGTACACCCTAGAACAGGTTGATTGCGAACGGCTCATTTCCCATT
TTAAATTCACCGCTTCGATGGATATAGGCGAAAAGAGAAGGCCGCAAAGTGGAGCCTTTACTTACCAGGACCACGATCGA
AAAATTGGTTTGAGAATCTCCACACTGCCAGCCTACCAGAACGAAAGCATGGTCATACGTCTCCTTCCCGAACAAAACCA
TATTCCTTCATACCAAATATCATTATTCCCATCCACATCGAAAAAATTAATTTCCCTTTTAAAACATGCACATGGTCTGA
TTATTTTTACCGGCCCTACAGGCAGCGGCAAAACCACAACATTGTATTCTATGCTGTCCGAAACATCGGAAATGGTTAAT
CGCAACGTCATCACACTCGAAGATCCCATTGAAAAACCGAGTGAATCAGTGCTTCAGGTCCAGGTCAATGAACGGGCCGG
AATCTCTTATTCTGCCGGCTTAAAGGCAATCCTCAGACATGATCCGGATATCATTATGGTCGGGGAAATTAGGGATAAGG
AGACTGCAGAGACAGCGATAAGGGCATCCTTGACTGGGCATTTGGTGCTGACTACGATGCATACACGGGATGCAAGGGGA
GCAATCTACAGGCTGATTGAATTCGGGATCAATTGGCTTGAAATCGAACAGACCTTGATCGCAGTAACCGCACAAAGGCT
TGTTGAACTGACATGTCCTTATTGTGAAGATGCTTGCTCGCCGTTTTGCTATTCCTCAGGAAGCGGCAAAAGAGGAAATG
TGTTTGAAATTCTTACGGGACGGGATTTATCTGCTGTATTGAAGGAAGCAAAAGGTGAACATCAGAATTACCACTACAAA
ACGCTCAAAGATGCTATCAAGAAAGGCATCGCTCTCGGATTTATCAAGGAATCGGAATACCAGAGGTGGGTTCTAAATGA
AGGAGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(4-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.695

100

0.57
  pilB Glaesserella parasuis strain SC1401

37.861

99.14

0.375