Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH36_RS16390 Genome accession   NZ_CP126080
Coordinates   3244079..3245770 (-) Length   563 a.a.
NCBI ID   WP_283903819.1    Uniprot ID   A0AA95KWP4
Organism   Mesobacillus sp. AQ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3239079..3250770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS16365 (QNH36_16365) - 3240223..3240486 (+) 264 WP_144476427.1 DUF2627 domain-containing protein -
  QNH36_RS16370 (QNH36_16370) - 3240492..3241226 (-) 735 WP_251540808.1 glycerophosphodiester phosphodiesterase -
  QNH36_RS16375 (QNH36_16375) - 3241266..3241406 (+) 141 WP_283903817.1 YycC family protein -
  QNH36_RS16380 (QNH36_16380) spo0A 3241609..3242403 (-) 795 WP_144476419.1 sporulation transcription factor Spo0A -
  QNH36_RS16385 (QNH36_16385) spoIVB 3242668..3243954 (-) 1287 WP_283903818.1 SpoIVB peptidase -
  QNH36_RS16390 (QNH36_16390) recN 3244079..3245770 (-) 1692 WP_283903819.1 DNA repair protein RecN Machinery gene
  QNH36_RS16395 (QNH36_16395) argR 3245787..3246236 (-) 450 WP_144476411.1 transcriptional regulator ArgR -
  QNH36_RS16400 (QNH36_16400) - 3246405..3247253 (-) 849 WP_144476408.1 TlyA family RNA methyltransferase -
  QNH36_RS16405 (QNH36_16405) dxs 3247257..3249149 (-) 1893 WP_144476405.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH36_RS16410 (QNH36_16410) - 3249451..3250344 (-) 894 WP_283903820.1 polyprenyl synthetase family protein -
  QNH36_RS16415 (QNH36_16415) - 3250347..3250580 (-) 234 WP_144476399.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63439.35 Da        Isoelectric Point: 5.0387

>NTDB_id=834706 QNH36_RS16390 WP_283903819.1 3244079..3245770(-) (recN) [Mesobacillus sp. AQ2]
MLNELSIRNFAIIESLSISFNKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFVRHGEDKAEIEGLFFIEGENHPCKSK
AAEFGIEIEDGMIVLRRDIAASGKSVCRINGKLVTIAVLREVGSTLIDIHGQHEHQELMDETRHINLLDQFGSEEILPAL
QEYQQVYRSFEQTLKKLKSLSENEQQMAHRLDLIQFQHDEILSANLMMNEDEELLEERRKLANFERIFESIQTSYNALHG
DQKGLDWIGMAMDNLQTAAELDPEYKTVAESVANSFYMLEDAARTIRNDLDSLEYDPQRLLEIDDRLNEINQLKRKYGKT
IEEILEYASKIEEEIETLQNKEVHIGQMEKELASLKKDLRIEADNLTETRKKWAKKLTKLIHKELKELYMEKAVFELKID
SDLDVFHKNGADKVEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
NVSTGSQVLCISHLPQVAAMADTHLYIAKVIKNGRTKTSVTPLSSSDKVKEIGRMISGVEITELTKQHAEELLQLAQNMK
AVT

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=834706 QNH36_RS16390 WP_283903819.1 3244079..3245770(-) (recN) [Mesobacillus sp. AQ2]
TTGTTAAATGAATTATCAATACGTAATTTCGCCATTATCGAATCTTTATCTATATCTTTCAATAAAGGACTGACTGTTCT
GACTGGAGAAACCGGTGCCGGTAAATCCATTATCATTGATGCAGTCCACTTGCTTGTCGGCGGGAGAGGTTCAGCTGAAT
TTGTCCGGCACGGCGAGGATAAAGCAGAGATTGAAGGCCTGTTTTTTATTGAAGGCGAAAACCATCCCTGTAAGTCGAAA
GCAGCAGAATTCGGCATTGAAATTGAGGATGGGATGATCGTTTTAAGGAGGGATATCGCAGCCAGTGGCAAAAGTGTTTG
CAGAATCAATGGCAAACTTGTCACCATCGCTGTCTTGAGGGAAGTCGGCTCAACGCTGATTGACATCCATGGCCAGCACG
AACATCAGGAACTGATGGATGAAACAAGGCATATCAATCTTCTTGACCAGTTTGGCTCAGAGGAAATCCTGCCTGCCCTC
CAGGAATATCAACAGGTATACAGATCATTTGAACAAACACTCAAAAAACTTAAGAGCCTCAGTGAAAATGAGCAGCAAAT
GGCCCACAGGCTGGACCTGATCCAGTTCCAGCATGATGAAATCCTGTCAGCGAACCTGATGATGAACGAAGATGAGGAAC
TGCTCGAAGAACGGCGGAAGCTTGCCAATTTCGAACGGATTTTCGAAAGCATCCAGACAAGCTACAATGCGCTGCACGGC
GATCAGAAAGGGCTGGATTGGATCGGGATGGCTATGGATAATCTGCAGACGGCTGCTGAATTGGATCCTGAATATAAAAC
TGTCGCAGAATCTGTTGCAAACAGCTTCTATATGCTCGAGGATGCTGCGAGAACGATCAGAAATGACCTCGATTCCCTTG
AGTATGACCCTCAGCGTTTGCTGGAGATAGATGACAGATTGAATGAAATCAACCAGCTTAAGAGAAAATATGGGAAAACG
ATTGAAGAGATCCTTGAATATGCTTCAAAGATCGAAGAAGAAATCGAAACGCTTCAAAACAAGGAAGTCCATATCGGCCA
GATGGAAAAGGAATTGGCATCTCTCAAAAAAGATTTGCGCATCGAAGCCGATAACTTAACCGAAACACGCAAAAAATGGG
CCAAGAAACTGACGAAGCTGATTCATAAAGAATTAAAAGAGCTTTATATGGAAAAAGCCGTATTTGAACTAAAGATCGAT
TCAGACCTCGATGTTTTCCATAAAAATGGAGCAGACAAAGTTGAATTTTATATTTCAACAAATCCTGGAGAGCCATTGAA
GCCATTGTCCAAGGTTGCTTCCGGCGGAGAATTGTCAAGAATCATGCTGGCTCTAAAAAGTATCTTCTCCAAACATCAGG
GTGTTACATCCATTATTTTTGATGAAGTGGATACAGGAGTGAGCGGGAGGGTCGCACAATCGATCGCTGAAAAGATCTAC
AATGTGTCGACAGGTTCCCAGGTGCTTTGTATTTCTCACTTGCCTCAGGTAGCTGCTATGGCTGATACCCATCTATATAT
TGCAAAGGTCATAAAAAATGGGCGGACAAAAACTTCTGTGACTCCGCTATCCTCATCTGATAAGGTGAAGGAAATCGGGA
GGATGATTTCCGGAGTGGAAATCACGGAGCTTACAAAACAGCATGCAGAAGAATTGCTGCAGCTGGCACAGAATATGAAG
GCTGTCACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.021

100

0.632