Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   U2S75_RS18770 Genome accession   NZ_CP140420
Coordinates   3920374..3923208 (+) Length   944 a.a.
NCBI ID   WP_322546587.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3915374..3928208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS18740 (U2S75_18735) - 3915612..3916694 (-) 1083 WP_000680211.1 DUF475 domain-containing protein -
  U2S75_RS18745 (U2S75_18740) tenA 3916957..3917631 (+) 675 WP_000899418.1 thiaminase II -
  U2S75_RS18750 (U2S75_18745) - 3917681..3918022 (-) 342 WP_064193130.1 GlpM family protein -
  U2S75_RS18755 (U2S75_18750) - 3918075..3918428 (-) 354 WP_000580164.1 DUF1304 domain-containing protein -
  U2S75_RS18760 (U2S75_18755) - 3918494..3919471 (-) 978 WP_064193131.1 zinc-binding dehydrogenase -
  U2S75_RS18765 (U2S75_18760) - 3919475..3920077 (-) 603 WP_000826320.1 TetR/AcrR family transcriptional regulator -
  U2S75_RS18770 (U2S75_18765) uvrA 3920374..3923208 (+) 2835 WP_322546587.1 excinuclease ABC subunit UvrA Machinery gene
  U2S75_RS18775 (U2S75_18770) - 3923242..3924948 (-) 1707 WP_000016109.1 GGDEF domain-containing protein -
  U2S75_RS18780 (U2S75_18775) omp33-36 3925942..3926841 (+) 900 WP_000733005.1 porin Omp33-36 -

Sequence


Protein


Download         Length: 944 a.a.        Molecular weight: 104429.68 Da        Isoelectric Point: 6.5116

>NTDB_id=834700 U2S75_RS18770 WP_322546587.1 3920374..3923208(+) (uvrA) [Acinetobacter baumannii strain 2023CK-00893]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLFQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDDLAKHADSLTGQYLSGKLKIEVPKKRTQSPRPDEFIKLSGAAGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLKQ

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=834700 U2S75_RS18770 WP_322546587.1 3920374..3923208(+) (uvrA) [Acinetobacter baumannii strain 2023CK-00893]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGTACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTAATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTATGCCGAAGGACAGCGCC
GTTATGTCGAATCACTTTCGGCATATGCCCGTCAGTTTTTATCGCAAATGGAAAAACCTGAAGTTGACTCGATTGAAGGT
TTATCACCAGCCATTGCCATTGAGCAAAAGTCTACCAGTCATAACCCACGTTCAACCGTTGGTACGATTACCGAAATTTA
TGACTATTTACGTCTGCTTTATGCACGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCGGTAAAGAACCTTGAGGAAGGTACAGCACTTATGTTGCTTGCCCCTGTTGTTCGTGAGCGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTTGTTCGTGCGCGTGTTGATGGTGAAATCATTGA
TATTGATACACCACCAGAACTCGACAAAAAGAAAAAACATACCATTGAAGTCGTTGTTGACCGCTTTAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAAACTGCACTGCGTTTAGGTGGCGATATTGCAGTTTTATCGTGGATGAAT
GGCGAACACCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGCGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAATAACCCGTTCGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTTAGCCCTGAAA
AACTCATTCCTAACCCTGAGCTTGCAATTAGTGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTTGGTTTTCAACTTGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
ATTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGTGGCCGTAAACATACACGCGTGCAAC
CGTTTGAAGGAATTTTGCCACACCTTGAGCGTCGCTATCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCACAA
TATTTATCTAACGCAGCGTGTGATGCATGTGGTGGTTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTAAAAGATAA
AACCATTGCCGACATTACCCGCATGTCGATTGGAGATGCTGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTACATTTCTTGGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGTTCTGCCGAAACACTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTCATGTACGTCCTTGATGAACCATCAATTGGTCTCCATCAACGTGATAATGACCGTTTATTTCAAACGCTAATTC
GCTTACGTGACTTAGGTAATACGGTATTAGTCGTTGAACATGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCTGGTGCTGGCGTGCATGGTGGCGTTGTCATTGCTGAAGGTACGTATGATGATCTGGCTAAACATGCTGATTC
TCTTACAGGACAATACCTTTCTGGCAAACTCAAAATTGAAGTGCCAAAAAAACGTACTCAATCACCAAGACCAGATGAAT
TTATCAAACTTTCAGGTGCAGCGGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGACTTGTGTC
ACGGGTGTTTCAGGTTCAGGTAAATCAACACTGATTAACCGTACGTTACTCCCACTGGCTGCAACACAGCTCAACGGTGC
AACGACTTTAACAGCTGAAAAATTTGACTCGATTGATGGTCTACAACATCTGGATAAAGTCGTTGATATTGACCAAAGCC
CAATTGGCCGTACACCGCGCTCTAATCCAGCGACTTATACGGGTCTATTTACGCCAATTCGTGAATTATTTGCTCAAACA
CCAGAAGCGAAAGCTCGTGGTTATAGTGCGGGTCGTTTCTCGTTTAACGTAAAAGGCGGACGTTGCGAAGCGTGTGAAGG
CGACGGTATGATTAAAGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCTTGTCATGGCAAGCGCTATA
ATCGTGAAACACTTGAAGTCGGCTATAAAGGCAAAAACATTTCTGATGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTTTTTAGTGCTATTCCAGTTATTCACCGTCGTTTAGAAACCTTAACTCAGGTAGGTCTAGGCTATATTCGTTTAGGTCA
GGCGGCTACTACTTTATCTGGTGGTGAAGCACAGCGTGTCAAACTGGCTCGTGAGTTAGCGAAACGTGATACGGGTAAAA
CACTTTATATCTTGGATGAACCAACAACAGGTCTGCATTTCCATGATATTGCCAAGTTACTCGATATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATTGTGGTAATTGAACATAACCTTGATGTAATTAAAACAGCAGACTGGGTGGTCGACTTAGG
CCCTGAAGGTGGTTCGGGCGGTGGTATGATCATTGCCGAAGGTACACCTGAACAAGTGGCTGAGGTTGAAATTTCCCATA
CGGGTCGTTTCTTGAAACCGATGTTGAAACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.356

100

0.564

  uvrA Streptococcus pneumoniae TIGR4

56.356

100

0.564

  uvrA Streptococcus pneumoniae D39

56.356

100

0.564