Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH36_RS00580 Genome accession   NZ_CP126080
Coordinates   113237..114616 (+) Length   459 a.a.
NCBI ID   WP_144481283.1    Uniprot ID   -
Organism   Mesobacillus sp. AQ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108237..119616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS00560 (QNH36_00560) - 108442..108903 (+) 462 WP_144481287.1 CtsR family transcriptional regulator -
  QNH36_RS00565 (QNH36_00565) - 108932..109477 (+) 546 WP_144481286.1 hypothetical protein -
  QNH36_RS00570 (QNH36_00570) - 109480..110562 (+) 1083 WP_144481285.1 protein arginine kinase -
  QNH36_RS00575 (QNH36_00575) clpC 110567..113005 (+) 2439 WP_144481284.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH36_RS00580 (QNH36_00580) radA 113237..114616 (+) 1380 WP_144481283.1 DNA repair protein RadA Machinery gene
  QNH36_RS00585 (QNH36_00585) disA 114621..115694 (+) 1074 WP_144481282.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH36_RS00590 (QNH36_00590) - 115975..117066 (+) 1092 WP_144481281.1 PIN/TRAM domain-containing protein -
  QNH36_RS00595 (QNH36_00595) ispD 117510..118205 (+) 696 WP_144481279.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH36_RS00600 (QNH36_00600) ispF 118249..118731 (+) 483 WP_144481278.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49724.04 Da        Isoelectric Point: 7.4031

>NTDB_id=834682 QNH36_RS00580 WP_144481283.1 113237..114616(+) (radA) [Mesobacillus sp. AQ2]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNKMVEEVESTGSTRRGAFANTGNTTIAAKATPITTIETVSEPRVKTDLNE
LNRVLGGGVVRGSLVLIGGDPGIGKSTLLLQVSYQLAKKAHSVLYISGEESMRQTKLRADRLGVTSDNLFVYSETNLQEI
SLTIENSNPDFVIVDSIQTIFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEAGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVSLLMAVLEKRVGLLLANQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDKPTRASDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERIILPENNLGGWTPPQGVELIGVSSVSHALKVTLGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=834682 QNH36_RS00580 WP_144481283.1 113237..114616(+) (radA) [Mesobacillus sp. AQ2]
ATGGCTAAAAGAAAAACGAAATTCATGTGCCAGGAATGCGGCTATGAATCTCCGAAATGGATGGGGAAATGTCCGGGCTG
CGGACAATGGAATAAGATGGTCGAGGAAGTGGAAAGCACTGGATCGACAAGAAGGGGGGCTTTTGCAAACACAGGAAATA
CCACTATTGCGGCAAAGGCGACACCAATCACTACAATTGAAACAGTCAGTGAACCGAGGGTTAAGACGGACCTCAACGAA
TTGAACCGCGTGCTTGGCGGAGGCGTTGTCAGGGGATCACTTGTCTTGATCGGCGGAGATCCGGGTATCGGAAAATCGAC
ACTCTTGCTCCAGGTATCCTATCAACTGGCGAAAAAGGCTCATTCTGTCCTTTATATTTCAGGTGAGGAATCCATGAGGC
AGACGAAGCTGCGCGCTGACAGGCTTGGAGTCACATCTGACAATCTCTTTGTCTATTCAGAAACGAATCTGCAGGAAATC
AGCCTGACAATCGAAAACAGCAATCCGGATTTTGTCATCGTCGATTCCATCCAGACGATTTTCCATCCGGAAGTTACCTC
TGCGCCGGGAAGCGTGTCGCAGGTAAGGGAATGTACGGCGGAACTGATGCGCATCGCGAAGACAAAAGGCATCGCCATCT
TCATCGTCGGACATGTGACGAAGGAAGGTTCGATTGCCGGTCCAAGGCTGCTTGAGCATATGGTGGATACCGTTCTTTAT
TTTGAGGGAGAAAGGCACCATACATACAGGATTCTCAGGGCGGTGAAAAACCGTTTTGGCTCGACGAATGAGATGGGCAT
TTTCGAGATGAAAGAAGCAGGCCTTGAGGAAGTGGCGAACCCTTCGGAGATCTTTTTGGAAGAAAGGTCACAGGGTGCTT
CCGGTTCGACGGTTGTCGCTTCGATGGAAGGAACTCGGCCGGTCCTGGTTGAAATCCAGGCGCTGATTTCACCGACGAGT
TTTGGAAATCCTCGGAGGATGGCTACCGGGATTGACCATAATCGGGTGTCGCTTTTGATGGCGGTGCTGGAAAAGCGCGT
CGGTTTGCTTCTGGCCAATCAGGATGCGTATTTGAAGGTGGCCGGCGGGGTGAAGCTGGATGAACCGGCAATCGACCTTG
CTGTAGCGGTGAGCATCGCATCGAGTTTCAGGGATAAGCCAACTCGTGCTTCTGATTGCATCATCGGTGAGGTTGGCCTC
ACGGGGGAAGTCCGAAGGGTATCAAGAATCGAGCAGCGTGTTCAGGAAGCAGCCAAGCTGGGCTTCGAAAGAATTATTTT
ACCAGAAAATAATCTTGGCGGATGGACTCCTCCACAGGGAGTCGAGTTGATTGGTGTATCATCTGTCAGCCATGCACTTA
AAGTCACCTTAGGAGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.739

100

0.769
  radA Streptococcus mitis NCTC 12261

64.317

98.911

0.636
  radA Streptococcus mitis SK321

64.317

98.911

0.636
  radA Streptococcus pneumoniae Rx1

64.097

98.911

0.634
  radA Streptococcus pneumoniae D39

64.097

98.911

0.634
  radA Streptococcus pneumoniae R6

64.097

98.911

0.634
  radA Streptococcus pneumoniae TIGR4

64.097

98.911

0.634