Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   U2S75_RS16690 Genome accession   NZ_CP140420
Coordinates   3509278..3509793 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3504278..3514793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS16670 (U2S75_16665) - 3504637..3506097 (+) 1461 WP_002157309.1 amino acid permease -
  U2S75_RS16675 (U2S75_16670) - 3506373..3507578 (+) 1206 WP_000512701.1 RtcB family protein -
  U2S75_RS16680 (U2S75_16675) - 3507597..3507740 (+) 144 WP_162138624.1 hypothetical protein -
  U2S75_RS16685 (U2S75_16680) omp38 3507865..3508896 (-) 1032 WP_005109473.1 outer membrane protein Omp38 -
  U2S75_RS16690 (U2S75_16685) fimT 3509278..3509793 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  U2S75_RS16695 (U2S75_16690) - 3509902..3511077 (+) 1176 WP_064193004.1 thiolase family protein -
  U2S75_RS16700 (U2S75_16695) - 3511204..3511647 (+) 444 WP_001176580.1 VOC family protein -
  U2S75_RS16705 (U2S75_16700) - 3511690..3512043 (-) 354 WP_064193003.1 multidrug efflux SMR transporter -
  U2S75_RS16710 (U2S75_16705) - 3512126..3512611 (-) 486 WP_064193002.1 DUF934 domain-containing protein -
  U2S75_RS16715 (U2S75_16710) - 3512604..3514247 (-) 1644 WP_000281764.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=834681 U2S75_RS16690 WP_000477151.1 3509278..3509793(+) (fimT) [Acinetobacter baumannii strain 2023CK-00893]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=834681 U2S75_RS16690 WP_000477151.1 3509278..3509793(+) (fimT) [Acinetobacter baumannii strain 2023CK-00893]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427