Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   U2S75_RS16550 Genome accession   NZ_CP140420
Coordinates   3480242..3480604 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3475242..3485604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS16540 (U2S75_16535) - 3477520..3479598 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  U2S75_RS16545 (U2S75_16540) - 3479645..3480181 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  U2S75_RS16550 (U2S75_16545) pilH 3480242..3480604 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  U2S75_RS16555 (U2S75_16550) pilG 3480628..3481011 (-) 384 WP_064192995.1 twitching motility response regulator PilG Regulator
  U2S75_RS16560 (U2S75_16555) - 3481294..3481932 (+) 639 WP_064194494.1 hypothetical protein -
  U2S75_RS16565 (U2S75_16560) - 3481992..3483110 (+) 1119 WP_064192993.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=834679 U2S75_RS16550 WP_000101096.1 3480242..3480604(-) (pilH) [Acinetobacter baumannii strain 2023CK-00893]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=834679 U2S75_RS16550 WP_000101096.1 3480242..3480604(-) (pilH) [Acinetobacter baumannii strain 2023CK-00893]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTCCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392