Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U2S75_RS09100 Genome accession   NZ_CP140420
Coordinates   1901723..1902358 (+) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896723..1907358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS09075 (U2S75_09070) - 1897563..1898576 (+) 1014 WP_001096105.1 aminoglycoside phosphotransferase family protein -
  U2S75_RS09080 (U2S75_09075) murU 1898576..1899265 (+) 690 WP_064192515.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  U2S75_RS09085 (U2S75_09080) rsmG 1899353..1899985 (+) 633 WP_016805720.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  U2S75_RS09090 (U2S75_09085) - 1900007..1900789 (+) 783 WP_002050124.1 ParA family protein -
  U2S75_RS09095 (U2S75_09090) - 1900786..1901673 (+) 888 WP_000023431.1 ParB/RepB/Spo0J family partition protein -
  U2S75_RS09100 (U2S75_09095) exbB 1901723..1902358 (+) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U2S75_RS09105 (U2S75_09100) - 1902374..1902802 (+) 429 WP_000669682.1 biopolymer transporter ExbD -
  U2S75_RS09110 (U2S75_09105) msbA 1902799..1904526 (+) 1728 WP_001070739.1 lipid A export permease/ATP-binding protein MsbA -
  U2S75_RS09115 (U2S75_09110) lpxK 1904529..1905539 (+) 1011 WP_000050450.1 tetraacyldisaccharide 4'-kinase -
  U2S75_RS09120 (U2S75_09115) kdsB 1905549..1906310 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U2S75_RS09125 (U2S75_09120) - 1906322..1907302 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=834657 U2S75_RS09100 WP_000264035.1 1901723..1902358(+) (exbB) [Acinetobacter baumannii strain 2023CK-00893]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=834657 U2S75_RS09100 WP_000264035.1 1901723..1902358(+) (exbB) [Acinetobacter baumannii strain 2023CK-00893]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393