Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH38_RS02530 Genome accession   NZ_CP126079
Coordinates   563758..564198 (+) Length   146 a.a.
NCBI ID   WP_167441022.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain ACCC03434     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 558758..569198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH38_RS02505 (QNH38_02505) - 559063..559410 (+) 348 WP_016819451.1 MTH1187 family thiamine-binding protein -
  QNH38_RS02515 (QNH38_02515) - 560133..561545 (+) 1413 WP_167441024.1 helix-turn-helix transcriptional regulator -
  QNH38_RS02520 (QNH38_02520) - 561734..561967 (+) 234 WP_167441023.1 hypothetical protein -
  QNH38_RS02525 (QNH38_02525) - 561990..562238 (-) 249 Protein_432 ran-binding protein 10 -
  QNH38_RS02530 (QNH38_02530) nucA/comI 563758..564198 (+) 441 WP_167441022.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH38_RS02535 (QNH38_02535) - 564369..565628 (+) 1260 WP_153795111.1 kelch repeat-containing protein -
  QNH38_RS02540 (QNH38_02540) - 565967..567232 (+) 1266 WP_123797873.1 IS110 family transposase -
  QNH38_RS02545 (QNH38_02545) - 567878..568225 (-) 348 WP_019685981.1 winged helix-turn-helix transcriptional regulator -
  QNH38_RS02550 (QNH38_02550) - 568386..569132 (-) 747 WP_031462735.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16263.20 Da        Isoelectric Point: 8.2532

>NTDB_id=834650 QNH38_RS02530 WP_167441022.1 563758..564198(+) (nucA/comI) [Paenibacillus polymyxa strain ACCC03434]
MEVSYDKRNRKRINCFLLAAIFSVQGVYAEPTAINQHTAAGYTLEFPSSRYPETRAHIRDGIAAGHSAVCTIDRDGAEEN
RRESLKGYPTKKGYDRDEWPMAMCAEGGAGADIRYITPSDNRGAGSWVSHQLDKYADGTKVRFIVK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=834650 QNH38_RS02530 WP_167441022.1 563758..564198(+) (nucA/comI) [Paenibacillus polymyxa strain ACCC03434]
ATGGAGGTGTCGTATGATAAAAGGAATCGTAAGAGGATTAATTGTTTTTTACTAGCTGCTATTTTCTCGGTACAAGGTGT
TTATGCTGAACCGACAGCAATCAACCAACATACAGCAGCTGGGTATACGTTGGAGTTCCCAAGTTCACGCTACCCTGAAA
CCAGGGCGCATATTAGAGATGGAATAGCAGCTGGACATTCTGCTGTATGTACGATTGACCGTGATGGAGCTGAAGAAAAC
AGAAGGGAGTCGCTCAAAGGCTATCCGACTAAAAAAGGATATGATCGCGACGAGTGGCCAATGGCAATGTGTGCTGAAGG
TGGCGCAGGTGCTGATATCAGATACATAACCCCTAGTGATAACCGGGGAGCAGGATCATGGGTAAGTCATCAGTTAGATA
AGTATGCTGATGGAACAAAGGTAAGATTCATAGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(56-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.231

71.233

0.493