Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNK09_RS26690 Genome accession   NZ_CP126078
Coordinates   5497683..5498636 (-) Length   317 a.a.
NCBI ID   WP_005830159.1    Uniprot ID   A0A9X7XNU7
Organism   Brevibacillus agri strain ACCC03016     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5492683..5503636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK09_RS26660 (QNK09_26660) - 5492953..5493393 (+) 441 WP_283858432.1 hypothetical protein -
  QNK09_RS26665 (QNK09_26665) - 5493381..5493680 (+) 300 WP_005830153.1 YxcD family protein -
  QNK09_RS26670 (QNK09_26670) - 5493888..5494763 (+) 876 WP_221842891.1 ABC transporter ATP-binding protein -
  QNK09_RS26675 (QNK09_26675) - 5494903..5495883 (-) 981 WP_007778327.1 siderophore ABC transporter substrate-binding protein -
  QNK09_RS26680 (QNK09_26680) - 5495990..5496748 (-) 759 WP_007778323.1 ABC transporter ATP-binding protein -
  QNK09_RS26685 (QNK09_26685) - 5496745..5497686 (-) 942 WP_007778320.1 iron chelate uptake ABC transporter family permease subunit -
  QNK09_RS26690 (QNK09_26690) ceuB 5497683..5498636 (-) 954 WP_005830159.1 ABC transporter permease Machinery gene
  QNK09_RS26695 (QNK09_26695) - 5498900..5499652 (-) 753 WP_283858433.1 DUF4097 family beta strand repeat-containing protein -
  QNK09_RS26700 (QNK09_26700) - 5499786..5501156 (-) 1371 WP_007778313.1 MATE family efflux transporter -
  QNK09_RS26705 (QNK09_26705) - 5501506..5501862 (+) 357 WP_005830165.1 response regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35096.39 Da        Isoelectric Point: 9.8050

>NTDB_id=834642 QNK09_RS26690 WP_005830159.1 5497683..5498636(-) (ceuB) [Brevibacillus agri strain ACCC03016]
MKKRYLVVALILLSMVSLFIGVKDISPLELFNLSDDKVQVMWISRIPRLISIIIAGISMSVVGLIMQQLTRNKFVSPTTA
GTEDSVRFGILVSLLVFVDASVWVKLLVAFVFALLGTFVFMKILDRVKYKDSIFIPLVGLMFGNIVGSITTFFAYKHDLI
QNMSSWLHGDFSSIMRGNYELLYISIPLVVIAYLFANKFTIAGMGEEFAINLGLNYKQVVNIGLAIVAMVSSVVILTVGT
IPFLGLIIPNIVTLYLGDNLKKSLAHTALLGAVFVLCCDILGRLIIFPYEISIGLMVGVVGSGIFVYLLMRRKAYER

Nucleotide


Download         Length: 954 bp        

>NTDB_id=834642 QNK09_RS26690 WP_005830159.1 5497683..5498636(-) (ceuB) [Brevibacillus agri strain ACCC03016]
ATGAAAAAAAGATATTTGGTTGTGGCCCTGATTCTGCTATCAATGGTATCCCTGTTTATCGGCGTGAAGGACATTTCGCC
CCTGGAGCTGTTCAATCTCAGCGACGACAAGGTTCAGGTGATGTGGATCAGCCGGATTCCCCGCCTGATTAGCATCATCA
TCGCCGGTATCAGCATGAGCGTGGTCGGCCTCATCATGCAGCAACTGACCCGCAATAAATTCGTCTCGCCTACGACGGCG
GGGACCGAAGATTCTGTCCGCTTCGGGATTCTCGTCTCCTTGCTTGTGTTTGTCGACGCCTCTGTATGGGTGAAGCTGCT
CGTGGCATTCGTTTTCGCTCTGCTCGGAACGTTTGTCTTCATGAAAATTCTCGACAGAGTGAAGTACAAAGACTCGATCT
TCATTCCGCTGGTCGGGCTAATGTTCGGGAATATCGTCGGGTCGATCACGACGTTTTTCGCCTACAAGCACGACCTGATC
CAGAACATGTCGTCCTGGTTGCACGGCGATTTTTCCTCCATCATGAGGGGCAACTACGAGCTTCTATACATAAGCATTCC
GCTGGTCGTCATTGCGTACCTGTTTGCCAACAAGTTTACGATCGCAGGGATGGGCGAGGAATTTGCCATCAACCTCGGGC
TGAATTACAAGCAGGTCGTCAATATCGGGCTGGCGATTGTCGCGATGGTTTCGTCCGTCGTCATCCTCACAGTGGGAACG
ATCCCGTTTTTAGGGCTTATTATTCCTAATATTGTGACGCTTTATCTCGGTGACAACCTGAAAAAAAGCTTGGCCCATAC
CGCCTTGCTGGGCGCGGTGTTCGTCCTCTGCTGCGATATTTTGGGACGCCTCATCATCTTCCCGTACGAAATTTCGATCG
GTTTGATGGTCGGGGTAGTGGGCAGCGGTATATTCGTGTACTTACTCATGAGAAGAAAGGCATATGAACGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.633

98.738

0.539