Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNK09_RS16995 Genome accession   NZ_CP126078
Coordinates   3539418..3539804 (+) Length   128 a.a.
NCBI ID   WP_235694694.1    Uniprot ID   -
Organism   Brevibacillus agri strain ACCC03016     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3534418..3544804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK09_RS16980 (QNK09_16980) - 3535054..3535941 (+) 888 WP_005831071.1 DMT family transporter -
  QNK09_RS16985 (QNK09_16985) - 3536048..3537646 (-) 1599 WP_007779109.1 amidohydrolase -
  QNK09_RS16990 (QNK09_16990) - 3537881..3539188 (+) 1308 WP_283857907.1 MFS transporter -
  QNK09_RS16995 (QNK09_16995) nucA/comI 3539418..3539804 (+) 387 WP_235694694.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNK09_RS17000 (QNK09_17000) - 3539889..3541625 (-) 1737 WP_221843387.1 ABC transporter ATP-binding protein -
  QNK09_RS17005 (QNK09_17005) - 3541594..3543477 (-) 1884 WP_283857908.1 ABC transporter ATP-binding protein -
  QNK09_RS17010 (QNK09_17010) - 3543537..3543689 (-) 153 WP_155808594.1 hypothetical protein -
  QNK09_RS17015 (QNK09_17015) - 3543658..3544092 (-) 435 WP_283857909.1 ABC transporter ATP-binding protein -
  QNK09_RS17020 (QNK09_17020) - 3544150..3544572 (-) 423 WP_283857910.1 ECF transporter S component -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14136.64 Da        Isoelectric Point: 4.9555

>NTDB_id=834630 QNK09_RS16995 WP_235694694.1 3539418..3539804(+) (nucA/comI) [Brevibacillus agri strain ACCC03016]
MFAEQQGVPTDSAATQADVILHFPRERYPETAQHIRSAIEKGQPAVCTIDRKAADKHREESLSGIPTKRGYDRDEWPMAM
CKEGGKGADIAYVSPSDNRGAGSWIANQLEDYPDGTRVQIVIDDQPAH

Nucleotide


Download         Length: 387 bp        

>NTDB_id=834630 QNK09_RS16995 WP_235694694.1 3539418..3539804(+) (nucA/comI) [Brevibacillus agri strain ACCC03016]
CTGTTTGCCGAGCAGCAGGGCGTCCCGACCGACAGCGCTGCGACGCAGGCGGATGTCATTTTGCATTTTCCCCGCGAACG
GTATCCCGAGACGGCGCAGCACATTCGCTCCGCCATCGAAAAAGGCCAGCCTGCCGTCTGTACCATCGACCGCAAAGCGG
CGGACAAGCATCGCGAGGAATCGCTTTCCGGCATTCCGACGAAGCGCGGCTACGATCGGGACGAGTGGCCGATGGCGATG
TGCAAGGAAGGCGGCAAGGGCGCCGATATCGCTTACGTCTCCCCTTCCGACAACCGCGGAGCAGGCTCGTGGATTGCCAA
CCAGCTTGAGGATTACCCGGACGGCACCCGCGTGCAGATTGTCATTGACGATCAGCCCGCGCATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(25-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.459

86.719

0.516