Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNH47_RS13930 Genome accession   NZ_CP126077
Coordinates   2815159..2816112 (-) Length   317 a.a.
NCBI ID   WP_283872972.1    Uniprot ID   -
Organism   Virgibacillus halodenitrificans strain ACCC02857     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2810159..2821112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH47_RS13910 (QNH47_13910) - 2810717..2811442 (-) 726 WP_060681850.1 SurA N-terminal domain-containing protein -
  QNH47_RS13915 (QNH47_13915) - 2812181..2813158 (-) 978 WP_283872971.1 siderophore ABC transporter substrate-binding protein -
  QNH47_RS13920 (QNH47_13920) - 2813470..2814225 (-) 756 WP_060681619.1 ABC transporter ATP-binding protein -
  QNH47_RS13925 (QNH47_13925) - 2814219..2815169 (-) 951 WP_019379136.1 iron chelate uptake ABC transporter family permease subunit -
  QNH47_RS13930 (QNH47_13930) ceuB 2815159..2816112 (-) 954 WP_283872972.1 ABC transporter permease Machinery gene
  QNH47_RS13935 (QNH47_13935) - 2816488..2817207 (-) 720 WP_283872973.1 DsbA family oxidoreductase -
  QNH47_RS13940 (QNH47_13940) - 2817296..2818162 (-) 867 WP_019379133.1 MBL fold metallo-hydrolase -
  QNH47_RS13945 (QNH47_13945) - 2818256..2818711 (-) 456 WP_019379132.1 DUF2188 domain-containing protein -
  QNH47_RS13950 (QNH47_13950) fni 2818792..2819847 (-) 1056 WP_019379131.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  QNH47_RS13955 (QNH47_13955) - 2820137..2820676 (+) 540 WP_283872974.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34944.23 Da        Isoelectric Point: 9.9551

>NTDB_id=834590 QNH47_RS13930 WP_283872972.1 2815159..2816112(-) (ceuB) [Virgibacillus halodenitrificans strain ACCC02857]
MKIRYLVTVLIILSIISIFTGVSSVSILDIFSLTEDQIQILTVSRLPRLVSILIAGMSMSICGLIMQQLSKNKFVSPTTS
GTLDSARLGILVSMMIFTSASPFQKMFVSFIFALLGTFIFMKILEKVKFKDAIFIPLIGLMFGNIISSISTFFAYKNDLI
QNLSSWMQGDFSMIMSGNYELMFVSIPILGLAFFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLVIVALVTASVVLAVGM
IPFLGLIIPNIVTIYQGDHLKKSLIHTALLGAIFVMACDIIGRVIIYPYEIPISLTVGVIGSGVFIYLLLRRKKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=834590 QNH47_RS13930 WP_283872972.1 2815159..2816112(-) (ceuB) [Virgibacillus halodenitrificans strain ACCC02857]
ATGAAAATTCGTTACTTAGTTACAGTACTTATTATCTTATCAATTATATCCATTTTTACTGGTGTCTCCAGTGTGTCTAT
ATTAGATATTTTTTCTTTAACCGAAGATCAAATACAAATATTAACAGTAAGTAGACTTCCCAGACTAGTAAGCATTCTAA
TTGCTGGAATGAGCATGAGTATCTGTGGATTGATTATGCAGCAGCTTAGTAAGAACAAGTTTGTTTCACCTACAACGTCT
GGAACATTGGATTCTGCGAGGCTGGGAATACTTGTTTCGATGATGATCTTTACATCCGCAAGCCCTTTCCAAAAAATGTT
CGTATCCTTTATCTTCGCTTTACTTGGTACGTTTATTTTTATGAAAATACTTGAAAAAGTTAAATTCAAGGATGCTATTT
TTATCCCATTAATCGGACTGATGTTTGGTAATATCATAAGTTCTATTTCTACTTTTTTTGCATATAAGAATGACCTGATT
CAAAATTTGTCATCATGGATGCAAGGCGATTTTTCAATGATTATGAGTGGGAATTATGAATTGATGTTCGTAAGTATACC
GATTTTAGGTCTCGCGTTTTTTTATGCGAACAAATTTACCATTGCCGGGATGGGAGAAGATTTTTCCAAAAACCTTGGTT
TGAATTATCGGCAGGTAGTGAATTTAGGTTTAGTTATCGTAGCACTTGTAACCGCATCAGTTGTATTGGCGGTTGGTATG
ATTCCGTTTTTAGGATTAATTATCCCGAACATTGTCACAATATACCAGGGCGACCACTTGAAGAAAAGTCTGATACATAC
AGCATTGCTGGGGGCAATATTTGTAATGGCATGTGATATTATCGGCAGGGTAATCATTTATCCATATGAAATCCCAATCA
GTTTAACGGTCGGGGTGATAGGTAGTGGCGTGTTCATCTACCTATTATTAAGGAGAAAGAAATATGGATTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539