Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JLC71_RS07570 Genome accession   NZ_AP024094
Coordinates   1599711..1601072 (-) Length   453 a.a.
NCBI ID   WP_200918131.1    Uniprot ID   A0A7I8E975
Organism   Jeongeupia sp. HS-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1594711..1606072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLC71_RS07545 (JHS3_14760) - 1595423..1595584 (+) 162 WP_200918126.1 DUF3149 domain-containing protein -
  JLC71_RS07550 (JHS3_14770) - 1595715..1597349 (-) 1635 WP_200918127.1 glycosyltransferase family 39 protein -
  JLC71_RS07555 (JHS3_14780) - 1597444..1597701 (-) 258 WP_200918128.1 type B 50S ribosomal protein L31 -
  JLC71_RS07560 (JHS3_14790) rho 1597789..1599045 (-) 1257 WP_200918129.1 transcription termination factor Rho -
  JLC71_RS07565 (JHS3_14800) trxA 1599235..1599561 (-) 327 WP_200918130.1 thioredoxin TrxA -
  JLC71_RS07570 (JHS3_14810) radA 1599711..1601072 (-) 1362 WP_200918131.1 DNA repair protein RadA Machinery gene
  JLC71_RS07575 (JHS3_14820) flgL 1601170..1602504 (-) 1335 WP_200918132.1 flagellar hook-associated protein FlgL -
  JLC71_RS07580 (JHS3_14830) flgK 1602520..1604472 (-) 1953 WP_200918133.1 flagellar hook-associated protein FlgK -
  JLC71_RS07585 (JHS3_14840) flgJ 1604509..1605402 (-) 894 WP_200918134.1 flagellar assembly peptidoglycan hydrolase FlgJ -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48259.73 Da        Isoelectric Point: 7.4883

>NTDB_id=83458 JLC71_RS07570 WP_200918131.1 1599711..1601072(-) (radA) [Jeongeupia sp. HS-3]
MAKDKSVFSCNACGALSPKWQGQCPGCGEWNTLVETIAEAKPSASGNRFAALAADGRVRQLADVDAEEMPRTATGIAELD
RVLGGGLVPGGVVLIGGDPGIGKSTLLLQALARMAQQHRVLYVSGEESAQQIALRAKRLDLADAPVALFAEIGLERILTM
LDREKPQVVVIDSIQTMYTEQLTSAPGSVAQVRECAAQLTRFAKRHGTTILLVGHVTKEGALAGPRVLEHIVDAVLYFEG
DTHSSFRLIRAIKNRFGAVNELGVFAMTDKGLKEVTNPSALFLSQHKEPVSGSCVLVTQEGSRPMLVEVQALVDDAHSPQ
PRRLAVGVEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRISEPAADLAMLLAIVSSLKDRPLPHKLVVFGEVGLAGE
VRPVQRGQERLREAAKLGFTHAIVPKANRPRSPIEGMTVTAVDRLADAVGAAL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=83458 JLC71_RS07570 WP_200918131.1 1599711..1601072(-) (radA) [Jeongeupia sp. HS-3]
ATGGCCAAGGACAAGTCCGTATTCAGTTGCAATGCCTGTGGTGCCCTCTCGCCCAAATGGCAGGGCCAGTGCCCCGGCTG
TGGCGAGTGGAACACCTTGGTCGAAACGATTGCCGAGGCCAAGCCCAGCGCCAGCGGCAACCGCTTTGCCGCACTGGCTG
CCGATGGTCGGGTGCGCCAGCTGGCCGATGTGGACGCCGAAGAAATGCCGCGTACCGCCACCGGTATTGCCGAACTCGAT
CGCGTGCTCGGCGGCGGCCTCGTGCCCGGCGGCGTGGTGCTGATCGGTGGCGATCCGGGCATCGGCAAGTCGACGTTACT
CTTGCAGGCATTGGCGCGGATGGCGCAACAGCACAGGGTGCTTTATGTGTCGGGCGAGGAATCGGCGCAGCAGATTGCCT
TGCGCGCCAAGCGCCTTGATCTGGCCGATGCACCGGTGGCGCTGTTCGCCGAAATCGGGCTCGAACGGATCCTGACCATG
CTCGATCGCGAGAAGCCGCAGGTTGTGGTCATCGATTCGATCCAGACCATGTATACCGAGCAATTGACCAGCGCGCCGGG
CAGCGTTGCTCAGGTGCGCGAATGCGCGGCGCAACTGACCCGCTTTGCCAAACGCCACGGCACGACGATCCTGCTGGTCG
GCCACGTCACCAAGGAAGGCGCACTGGCCGGACCGCGCGTGCTCGAGCATATCGTCGACGCGGTGCTGTATTTCGAAGGC
GATACCCACTCGAGCTTCCGGCTGATCCGCGCGATCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGTGTGTTCGCCAT
GACCGACAAAGGCCTCAAGGAGGTCACCAATCCGTCGGCGCTGTTTTTAAGCCAGCACAAGGAGCCGGTGTCCGGTTCGT
GCGTGCTGGTGACGCAGGAGGGCTCGCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTCGACGACGCGCACTCACCGCAA
CCCCGACGTCTAGCGGTCGGGGTCGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCATCGCCACGCTGGGATTGC
CGCCTTCGATCAGGATGTCTTCATCAATGCGGTCGGCGGCGTGCGCATCAGCGAACCGGCGGCCGATCTGGCGATGCTGC
TGGCCATTGTCTCCAGCCTGAAAGACCGGCCCTTGCCACACAAGCTGGTGGTATTCGGCGAAGTGGGTCTGGCCGGCGAA
GTCCGGCCAGTGCAGCGCGGCCAGGAGCGCCTGCGTGAGGCGGCCAAGCTCGGATTCACCCATGCCATCGTGCCCAAGGC
CAATCGGCCGCGATCACCGATCGAAGGCATGACCGTGACGGCGGTCGATCGCCTCGCTGATGCGGTCGGCGCGGCCTTGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-220)

Subunit ChlI of Mg-chelatase (ChlI)

(351-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8E975

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.164

100

0.492
  radA Streptococcus mitis NCTC 12261

47.473

100

0.477
  radA Streptococcus mitis SK321

47.253

100

0.475
  radA Streptococcus pneumoniae Rx1

49.061

94.04

0.461
  radA Streptococcus pneumoniae D39

49.061

94.04

0.461
  radA Streptococcus pneumoniae R6

49.061

94.04

0.461
  radA Streptococcus pneumoniae TIGR4

49.061

94.04

0.461

Multiple sequence alignment