Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ITJ29_RS12005 Genome accession   NZ_CP126075
Coordinates   2508843..2510675 (-) Length   610 a.a.
NCBI ID   WP_021360722.1    Uniprot ID   -
Organism   Clostridioides difficile strain CDI-02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2503843..2515675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITJ29_RS11985 (ITJ29_11985) - 2503869..2505233 (-) 1365 WP_021360719.1 aldehyde dehydrogenase -
  ITJ29_RS11990 (ITJ29_11990) - 2505545..2506069 (-) 525 WP_021360720.1 flavodoxin domain-containing protein -
  ITJ29_RS11995 (ITJ29_11995) - 2506118..2506615 (-) 498 WP_021360721.1 MarR family winged helix-turn-helix transcriptional regulator -
  ITJ29_RS12000 (ITJ29_12000) hflX 2506848..2508119 (-) 1272 WP_009897369.1 GTPase HflX -
  ITJ29_RS12005 (ITJ29_12005) rcrQ 2508843..2510675 (-) 1833 WP_021360722.1 ABC transporter ATP-binding protein Regulator
  ITJ29_RS12010 (ITJ29_12010) - 2510668..2512914 (-) 2247 WP_021360723.1 ABC transporter ATP-binding protein -
  ITJ29_RS12015 (ITJ29_12015) - 2512982..2513443 (-) 462 WP_003433857.1 MarR family winged helix-turn-helix transcriptional regulator -
  ITJ29_RS12020 (ITJ29_12020) - 2513748..2514314 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  ITJ29_RS12025 (ITJ29_12025) - 2515001..2515339 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68047.83 Da        Isoelectric Point: 6.0560

>NTDB_id=834539 ITJ29_RS12005 WP_021360722.1 2508843..2510675(-) (rcrQ) [Clostridioides difficile strain CDI-02]
MSRMGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLFLYLISALFSFIQGFIMSGISQKVSYNLRKEISAKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEDQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=834539 ITJ29_RS12005 WP_021360722.1 2508843..2510675(-) (rcrQ) [Clostridioides difficile strain CDI-02]
ATGAGTAGAATGGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTCTAGTAATTGTATTTGCTATTGGTAGTGCGTCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGCTAGTGAGTAAAGTTTCTGGAGGAAAC
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAACCTTTTTACTTTTCCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAAGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGCAAAATTGGATA
GATTGCCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAGGAAACTTACAGTGGCCAAACAATA
GTAAAAGCATTTAATCGTGAGGATGAAGTAATTGAAGAGTTTGATAAACTAAATGATAGCCTGTATAATTCAGCGTGGAA
ATCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAGTCATTTATACAGTATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGACCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGCAAAATTGACTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTTTTAATGAGATTTTATGATGTTAATAGCGGCTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAAGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATACAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTCGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAACCATGA
AGAACTTCTAAAGAAAGGCGGATTCTATGCCAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(385-533)

ABC transporter transmembrane region (ABC_membrane)

(40-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.607

96.885

0.5