Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   Hhaem_RS09170 Genome accession   NZ_AP024093
Coordinates   1867103..1867390 (+) Length   95 a.a.
NCBI ID   WP_223894345.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain 2019-19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862103..1872390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Hhaem_RS09150 (Hhaem_17400) suhB 1864151..1864954 (-) 804 WP_005633301.1 inositol-1-monophosphatase -
  Hhaem_RS09155 (Hhaem_17410) comN 1865154..1865672 (+) 519 WP_215770196.1 type II secretion system protein Machinery gene
  Hhaem_RS09160 (Hhaem_17420) comO 1865666..1866382 (+) 717 WP_223894344.1 type II secretion system protein J Machinery gene
  Hhaem_RS09165 (Hhaem_17430) comP 1866427..1867110 (+) 684 WP_223893568.1 DUF2572 family protein Machinery gene
  Hhaem_RS09170 (Hhaem_17440) comQ 1867103..1867390 (+) 288 WP_223894345.1 DUF5374 domain-containing protein Machinery gene
  Hhaem_RS09175 (Hhaem_17450) recC 1867439..1870798 (+) 3360 WP_223893570.1 exodeoxyribonuclease V subunit gamma -
  Hhaem_RS09180 (Hhaem_17460) nrdR 1870861..1871310 (+) 450 WP_223893572.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10933.73 Da        Isoelectric Point: 9.7856

>NTDB_id=83445 Hhaem_RS09170 WP_223894345.1 1867103..1867390(+) (comQ) [Haemophilus haemolyticus strain 2019-19]
MNKGMSLTTLLFSLALFSILFIAFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLPCEQLIQQNGLTFRVQCENER
VIVRYPMGEISIKTK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=83445 Hhaem_RS09170 WP_223894345.1 1867103..1867390(+) (comQ) [Haemophilus haemolyticus strain 2019-19]
ATGAATAAAGGCATGTCGCTCACTACCCTATTATTTTCTTTGGCTTTATTTAGCATTTTATTTATTGCTTTCAATCAATG
GACGGCAAGCCAGCGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCGATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGATTACCTTGTGAACAATTAATACAACAAAATGGCTTAACTTTTCGCGTTCAATGTGAAAACGAACGC
GTCATTGTGCGTTATCCGATGGGTGAAATTTCGATAAAAACTAAGTAG

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

85.263

100

0.853

Multiple sequence alignment