Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   Hhaem_RS05040 Genome accession   NZ_AP024093
Coordinates   1005872..1008238 (+) Length   788 a.a.
NCBI ID   WP_223892911.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain 2019-19     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1000872..1013238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Hhaem_RS05015 (Hhaem_09470) - 1001149..1002519 (-) 1371 WP_223892909.1 N-acetylmuramoyl-L-alanine amidase -
  Hhaem_RS05020 (Hhaem_09480) tsaE 1002527..1003003 (-) 477 WP_118867791.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  Hhaem_RS05025 (Hhaem_09490) folK 1003079..1003561 (-) 483 WP_223892910.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  Hhaem_RS05030 (Hhaem_09500) pcnB 1003570..1005012 (-) 1443 WP_396264601.1 polynucleotide adenylyltransferase PcnB -
  Hhaem_RS05035 (Hhaem_09510) dksA 1005175..1005612 (-) 438 WP_005627987.1 RNA polymerase-binding protein DksA -
  Hhaem_RS05040 (Hhaem_09520) rec2 1005872..1008238 (+) 2367 WP_223892911.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Hhaem_RS05045 (Hhaem_09530) msbA 1008279..1010042 (+) 1764 WP_223892914.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  Hhaem_RS05050 (Hhaem_09540) lpxK 1010115..1011122 (+) 1008 WP_223892915.1 tetraacyldisaccharide 4'-kinase -
  Hhaem_RS05055 (Hhaem_09550) - 1011118..1011291 (+) 174 WP_223894313.1 Trm112 family protein -
  Hhaem_RS05060 (Hhaem_09560) kdsB 1011295..1012059 (+) 765 WP_223892917.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89486.83 Da        Isoelectric Point: 9.7480

>NTDB_id=83439 Hhaem_RS05040 WP_223892911.1 1005872..1008238(+) (rec2) [Haemophilus haemolyticus strain 2019-19]
MKLNLITLVILLIVADLTLLFLPQSWLLPWQVAFVIAFALIFLFIFLRRNFLVFLAFFIISLGYIHHSALSLLQQAQSVT
AQKQAVTFEIQEILHQQDYQTLIATATLADNLREQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADISSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLSM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRHYSPLQLFTLVVAFLLF
CESLMPLSVSFWLSCGAVGCLIVWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFLLVPLILFAVFTNGAVFSWQLANKLAEGITGLISVFQGNWFNISFNLALVLTALCAGIFMLIIWSIYREPE
ISSSTKQIKRARFFTLNLSKPLIKNDRINALRCSFGIMLLCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGPAWLGGNMAELEILPYLQREGVTLEKLILSHDDNDHAGGASTILKAYPNVEFITPSRKNYGENHRTFCTAGRDWDWQG
LHFQILSPYSIVERADNPHSCVILVDDGKHSVLLTGDAEVKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVIERLQRYKSAVENTAISGQVRVNFFKDRLEIQQARTEFSPWYARVIGFSSE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=83439 Hhaem_RS05040 WP_223892911.1 1005872..1008238(+) (rec2) [Haemophilus haemolyticus strain 2019-19]
ATGAAATTAAACTTAATAACTTTGGTTATCTTATTGATTGTTGCGGATTTAACGTTATTATTTCTACCGCAGTCATGGCT
ATTGCCTTGGCAAGTTGCTTTCGTTATTGCGTTTGCTTTGATTTTTCTTTTTATTTTTTTGCGTAGAAATTTCTTAGTGT
TTCTTGCTTTTTTTATTATTTCTCTCGGTTATATACATCATTCAGCACTCAGCTTGTTACAACAGGCTCAAAGCGTTACC
GCTCAAAAACAAGCGGTGACTTTTGAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACTCTCATTGCTACAGCAAC
ATTGGCGGATAACTTACGAGAGCAACGAATTTTTTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCGGAAATTTCCTTACGCCCCCTTTCTGCAAGATTAAATTTTGGCGGATTTGATCGGCAACAATGGTATTTCTCAAAG
GGAATTACGGCTGTTGGAACCGTAAAAAGTGCGGTGAAAATTGCTGATATTTCATCATTGCGCGCAGAAAAATTGCAACA
AGTGAAAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCGTTAGCCTTTGGTGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGTCGATG
GGGATTGGATTTTACTTGGCGCGTGTTGTGCAAGTATTTTTCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCTCTTGTTT
TCGTTTTTTTCGTTCAAATAATGAGGCGACATTATTCGCCTCTTCAGCTTTTTACGTTGGTTGTCGCATTCTTGCTTTTC
TGTGAGTCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCCGTTGGTTGTTTGATCGTCTGGTATCGTTA
TGTGCCTTTTTCTCTTTTTCAATGGAAAAATCGCCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATTGCCGTACCACTTTATAGCTTTTTGCTTGTGCCCTTGATTTTATTTGCTGTTTTTACCAATGGCGCGGTTTTTTC
TTGGCAACTTGCAAACAAGTTAGCCGAAGGAATCACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGTTTAATATTTCAT
TTAATTTAGCGCTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGCTAATTATTTGGAGTATTTACCGAGAACCCGAG
ATTTCATCATCAACCAAACAAATAAAACGAGCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGATAAAAAATGATCG
AATCAACGCTTTGCGATGTTCTTTCGGCATTATGTTGCTTTGTTTTATGATTTTGTTGTTTAAACAATTGAGTAAGCCAA
CTTGGCAGGTAGACACTTTAGATGTAGGGCAGGGCTTAGCAACGTTGATTGTGAAAAATGGTAAAGGGATTCTCTATGAT
ACGGGTCCTGCATGGCTAGGGGGAAATATGGCTGAATTAGAAATTTTGCCTTATTTGCAAAGAGAAGGGGTTACTTTGGA
AAAGTTGATTTTGAGCCACGATGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCGAATGTAGAAT
TTATTACCCCTTCACGAAAAAACTATGGGGAAAATCACCGCACTTTTTGTACTGCTGGACGTGATTGGGATTGGCAAGGG
CTACATTTTCAAATACTTTCACCATATTCTATTGTGGAGCGAGCAGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTGCTAACAGGCGATGCTGAAGTAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCCCATTATTCGGTTATAGAAAGGCTTCAACGCTATAAAAGTGC
GGTAGAAAATACCGCAATTTCAGGGCAAGTGCGGGTAAATTTTTTTAAAGACCGATTAGAAATCCAACAAGCACGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTCTCGAGCGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(26-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

90.482

100

0.905

Multiple sequence alignment