Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QM226_RS21500 Genome accession   NZ_CP125992
Coordinates   4167721..4168764 (-) Length   347 a.a.
NCBI ID   WP_001013200.1    Uniprot ID   A0AA96SWA8
Organism   Bacillus cereus strain FFI_gr_36     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4162721..4173764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM226_RS21455 (QM226_004303) - 4163148..4163348 (-) 201 WP_000106081.1 YqzE family protein -
  QM226_RS21460 (QM226_004304) aroK 4163387..4163884 (-) 498 WP_000836640.1 shikimate kinase AroK -
  QM226_RS21465 (QM226_004305) - 4164005..4164655 (-) 651 WP_000183878.1 2OG-Fe(II) oxygenase -
  QM226_RS21470 (QM226_004306) comGG 4164831..4165202 (-) 372 WP_001231192.1 competence type IV pilus minor pilin ComGG -
  QM226_RS21475 (QM226_004307) comGF 4165199..4165669 (-) 471 WP_000923094.1 competence type IV pilus minor pilin ComGF -
  QM226_RS21480 (QM226_004308) comGE 4165639..4165941 (-) 303 WP_000829456.1 competence type IV pilus minor pilin ComGE -
  QM226_RS21485 (QM226_004309) comGD 4165934..4166389 (-) 456 WP_000810395.1 comG operon protein ComGD -
  QM226_RS21490 (QM226_004310) comGC 4166386..4166685 (-) 300 WP_001178696.1 comG operon protein ComGC -
  QM226_RS21495 (QM226_004311) comGB 4166697..4167728 (-) 1032 WP_283729318.1 comG operon protein ComGB -
  QM226_RS21500 (QM226_004312) comGA 4167721..4168764 (-) 1044 WP_001013200.1 competence protein ComGA Machinery gene
  QM226_RS21505 (QM226_004313) - 4168970..4169665 (+) 696 WP_000434120.1 metalloregulator ArsR/SmtB family transcription factor -
  QM226_RS21510 (QM226_004314) - 4169791..4170033 (+) 243 WP_000440708.1 DUF2626 domain-containing protein -
  QM226_RS21515 (QM226_004315) - 4170141..4171535 (+) 1395 WP_072180504.1 L-cystine transporter -
  QM226_RS21520 (QM226_004316) - 4171710..4172117 (-) 408 WP_000877909.1 hypothetical protein -
  QM226_RS21525 (QM226_004317) - 4172205..4172420 (-) 216 WP_001008320.1 DUF3912 family protein -
  QM226_RS21530 (QM226_004318) - 4172673..4172984 (+) 312 WP_001093243.1 hypothetical protein -
  QM226_RS21535 (QM226_004319) - 4173021..4173509 (-) 489 WP_000764252.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39412.97 Da        Isoelectric Point: 9.2147

>NTDB_id=834214 QM226_RS21500 WP_001013200.1 4167721..4168764(-) (comGA) [Bacillus cereus strain FFI_gr_36]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=834214 QM226_RS21500 WP_001013200.1 4167721..4168764(-) (comGA) [Bacillus cereus strain FFI_gr_36]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCCTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATATTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGTCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366