Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QM225_RS20680 Genome accession   NZ_CP125989
Coordinates   4000613..4001656 (-) Length   347 a.a.
NCBI ID   WP_001013197.1    Uniprot ID   A0AAE9TCD1
Organism   Bacillus cereus strain FFI_gr_46     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3995613..4006656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM225_RS20635 (QM225_004136) - 3996040..3996240 (-) 201 WP_000106081.1 YqzE family protein -
  QM225_RS20640 (QM225_004137) aroK 3996279..3996776 (-) 498 WP_000836640.1 shikimate kinase AroK -
  QM225_RS20645 (QM225_004138) - 3996897..3997547 (-) 651 WP_000183878.1 2OG-Fe(II) oxygenase -
  QM225_RS20650 (QM225_004139) comGG 3997723..3998094 (-) 372 WP_001231192.1 competence type IV pilus minor pilin ComGG -
  QM225_RS20655 (QM225_004140) comGF 3998091..3998561 (-) 471 WP_000923094.1 competence type IV pilus minor pilin ComGF -
  QM225_RS20660 (QM225_004141) comGE 3998531..3998833 (-) 303 WP_000829456.1 competence type IV pilus minor pilin ComGE -
  QM225_RS20665 (QM225_004142) comGD 3998826..3999281 (-) 456 WP_000810395.1 comG operon protein ComGD -
  QM225_RS20670 (QM225_004143) comGC 3999278..3999577 (-) 300 WP_001178696.1 comG operon protein ComGC -
  QM225_RS20675 (QM225_004144) comGB 3999589..4000620 (-) 1032 WP_000471910.1 comG operon protein ComGB -
  QM225_RS20680 (QM225_004145) comGA 4000613..4001656 (-) 1044 WP_001013197.1 competence protein ComGA Machinery gene
  QM225_RS20685 (QM225_004146) - 4001862..4002557 (+) 696 WP_000434117.1 metalloregulator ArsR/SmtB family transcription factor -
  QM225_RS20690 (QM225_004147) - 4002683..4002925 (+) 243 WP_000440711.1 DUF2626 domain-containing protein -
  QM225_RS20695 (QM225_004148) - 4003033..4004427 (+) 1395 WP_283730171.1 L-cystine transporter -
  QM225_RS20700 (QM225_004149) - 4004603..4005010 (-) 408 WP_000877905.1 hypothetical protein -
  QM225_RS20705 (QM225_004150) - 4005098..4005313 (-) 216 WP_001008320.1 DUF3912 family protein -
  QM225_RS20710 (QM225_004151) - 4005566..4005877 (+) 312 WP_001093243.1 hypothetical protein -
  QM225_RS20715 (QM225_004152) - 4005914..4006402 (-) 489 WP_000764252.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39397.95 Da        Isoelectric Point: 9.0635

>NTDB_id=834168 QM225_RS20680 WP_001013197.1 4000613..4001656(-) (comGA) [Bacillus cereus strain FFI_gr_46]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKILLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=834168 QM225_RS20680 WP_001013197.1 4000613..4001656(-) (comGA) [Bacillus cereus strain FFI_gr_46]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATACTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGATACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATTGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCCGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579