Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QM225_RS20330 Genome accession   NZ_CP125989
Coordinates   3948668..3949462 (-) Length   264 a.a.
NCBI ID   WP_141532041.1    Uniprot ID   -
Organism   Bacillus cereus strain FFI_gr_46     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3943668..3954462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM225_RS20310 (QM225_004071) - 3945469..3945702 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  QM225_RS20315 (QM225_004072) - 3945751..3946479 (-) 729 WP_017560059.1 glycerophosphodiester phosphodiesterase -
  QM225_RS20320 (QM225_004073) - 3946530..3946676 (+) 147 WP_001247671.1 YycC family protein -
  QM225_RS20325 (QM225_004074) - 3946844..3948370 (-) 1527 WP_000218391.1 glycosyltransferase family 39 protein -
  QM225_RS20330 (QM225_004075) spo0A 3948668..3949462 (-) 795 WP_141532041.1 sporulation transcription factor Spo0A Regulator
  QM225_RS20335 (QM225_004076) spoIVB 3949750..3951048 (-) 1299 WP_002037056.1 SpoIVB peptidase -
  QM225_RS20340 (QM225_004077) recN 3951167..3952906 (-) 1740 WP_000947757.1 DNA repair protein RecN Machinery gene
  QM225_RS20345 (QM225_004078) argR 3953174..3953623 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.13 Da        Isoelectric Point: 7.1176

>NTDB_id=834166 QM225_RS20330 WP_141532041.1 3948668..3949462(-) (spo0A) [Bacillus cereus strain FFI_gr_46]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLQDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=834166 QM225_RS20330 WP_141532041.1 3948668..3949462(-) (spo0A) [Bacillus cereus strain FFI_gr_46]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTACAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAAAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCAAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTTATTGCAATGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.524

100

0.814