Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QM225_RS09815 Genome accession   NZ_CP125989
Coordinates   1902585..1902872 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus cereus strain FFI_gr_46     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897585..1907872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM225_RS09795 (QM225_001962) - 1898761..1898958 (+) 198 WP_001048092.1 DUF4083 domain-containing protein -
  QM225_RS09800 (QM225_001963) - 1898990..1899451 (+) 462 WP_000024996.1 NUDIX hydrolase -
  QM225_RS09805 (QM225_001964) nadE 1899498..1900316 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  QM225_RS09810 (QM225_001965) - 1900588..1902468 (+) 1881 WP_283730582.1 FtsX-like permease family protein -
  QM225_RS09815 (QM225_001966) abrB 1902585..1902872 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QM225_RS09820 (QM225_001967) - 1903147..1904097 (+) 951 WP_283730583.1 serine protease -
  QM225_RS09825 (QM225_001968) - 1904138..1904446 (-) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  QM225_RS09830 (QM225_001969) - 1904554..1905489 (+) 936 WP_283730584.1 aldo/keto reductase -
  QM225_RS09835 (QM225_001970) - 1905538..1906712 (+) 1175 Protein_1852 MFS transporter -
  QM225_RS09840 (QM225_001971) - 1906901..1907125 (-) 225 WP_000162601.1 hypothetical protein -
  QM225_RS09845 (QM225_001972) - 1907210..1907557 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=834158 QM225_RS09815 WP_000648330.1 1902585..1902872(+) (abrB) [Bacillus cereus strain FFI_gr_46]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=834158 QM225_RS09815 WP_000648330.1 1902585..1902872(+) (abrB) [Bacillus cereus strain FFI_gr_46]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516