Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QM225_RS06500 Genome accession   NZ_CP125989
Coordinates   1258867..1259190 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus strain FFI_gr_46     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253867..1264190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM225_RS06470 (QM225_001295) - 1254250..1255077 (-) 828 WP_371746607.1 IS3 family transposase -
  QM225_RS06475 (QM225_001296) - 1255047..1255367 (-) 321 WP_001074673.1 helix-turn-helix domain-containing protein -
  QM225_RS06480 (QM225_001297) sipW 1255622..1256191 (+) 570 WP_000767813.1 signal peptidase I SipW -
  QM225_RS06485 (QM225_001298) - 1256254..1256841 (+) 588 WP_000172840.1 CalY family protein -
  QM225_RS06490 (QM225_001299) - 1257003..1257800 (+) 798 WP_264456081.1 DUF4047 domain-containing protein -
  QM225_RS06495 (QM225_001300) calY 1258198..1258791 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  QM225_RS06500 (QM225_001301) sinR 1258867..1259190 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  QM225_RS06505 (QM225_001302) - 1259270..1259404 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  QM225_RS06510 (QM225_001303) inhA1 1259748..1262135 (+) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  QM225_RS06515 (QM225_001304) - 1262307..1263674 (+) 1368 WP_000116798.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=834155 QM225_RS06500 WP_000578878.1 1258867..1259190(-) (sinR) [Bacillus cereus strain FFI_gr_46]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=834155 QM225_RS06500 WP_000578878.1 1258867..1259190(-) (sinR) [Bacillus cereus strain FFI_gr_46]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692