Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   VNTUMSATTG_RS24540 Genome accession   NZ_AP024088
Coordinates   1301293..1302390 (-) Length   365 a.a.
NCBI ID   WP_200767618.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296293..1307390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS24525 (VNTUMSATTG_47950) - 1296379..1297638 (+) 1260 WP_004408225.1 hydroxymethylglutaryl-CoA reductase -
  VNTUMSATTG_RS24530 (VNTUMSATTG_47960) - 1297714..1298361 (-) 648 WP_022561556.1 hypothetical protein -
  VNTUMSATTG_RS24535 (VNTUMSATTG_47970) - 1298665..1301274 (-) 2610 WP_200767617.1 LuxQ periplasmic sensor domain-containing protein -
  VNTUMSATTG_RS24540 (VNTUMSATTG_47980) luxP 1301293..1302390 (-) 1098 WP_200767618.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  VNTUMSATTG_RS24545 (VNTUMSATTG_47990) - 1302556..1303188 (-) 633 WP_004408230.1 response regulator -
  VNTUMSATTG_RS24550 (VNTUMSATTG_48000) narQ 1303175..1304893 (-) 1719 WP_022611641.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  VNTUMSATTG_RS24555 napF 1305094..1305585 (+) 492 WP_080717301.1 ferredoxin-type protein NapF -
  VNTUMSATTG_RS24560 (VNTUMSATTG_48010) - 1305588..1305890 (+) 303 WP_004408234.1 chaperone NapD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41192.68 Da        Isoelectric Point: 8.0026

>NTDB_id=83412 VNTUMSATTG_RS24540 WP_200767618.1 1301293..1302390(-) (luxP) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MKLRHLLVGTISLALTSSLNAAQVLNGYWEYSDFLKTFPEQQSLVRNFSDVVRSEPVPLKVKQRKPVTISVIYPGEQVSD
YWRRNIKAFSKRMDELGIEYKINKVFTRPNVDIRQQSASLMEAIRNKSGYLIFTLDTGRHRKFIEHVLNSPDTKLILQNI
TTPLKAWEQNQPFMYVGFDHATGSRALASHFKSRFPRGADYSVLFFSQGYISAARGDTFIDAMSSEGENYQLRSSFYTKA
SRESGYQAAKNAIQKGDNLAFMYACSTDVALGATDAIKELGRNDIIINGWGGGSAELEAIQKGELNVTIMRMNDDTGVAM
AEAIKMDLEDKTVPTVYSGDFEIVTSQDSEERIQELKLRAFRYSD

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=83412 VNTUMSATTG_RS24540 WP_200767618.1 1301293..1302390(-) (luxP) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGAAATTGCGACATCTTTTGGTTGGCACCATCAGTTTGGCTTTAACGTCGAGCTTAAACGCAGCACAAGTTCTCAACGG
GTATTGGGAATACAGTGATTTCCTTAAAACCTTCCCAGAGCAGCAGTCACTGGTCAGAAACTTTAGTGATGTCGTTCGCT
CTGAGCCCGTCCCACTTAAGGTAAAACAGAGAAAACCTGTCACGATCTCGGTTATCTATCCGGGTGAGCAGGTGTCTGAT
TACTGGCGCAGAAACATCAAAGCATTCAGCAAAAGAATGGATGAACTGGGCATTGAGTATAAAATTAACAAAGTTTTTAC
TCGCCCGAATGTAGACATTCGTCAGCAAAGTGCTTCTTTGATGGAAGCCATCCGTAACAAGTCAGGCTATCTGATCTTCA
CGTTAGATACAGGTCGACACAGAAAATTCATCGAACACGTTCTCAATAGCCCAGATACCAAACTCATACTGCAAAACATC
ACCACACCGCTTAAAGCGTGGGAACAAAACCAACCCTTTATGTATGTTGGCTTTGACCATGCCACGGGAAGTCGCGCTCT
TGCCAGCCATTTTAAATCTCGTTTTCCGCGAGGCGCAGACTACTCAGTACTCTTCTTTTCTCAGGGCTATATCAGTGCTG
CACGTGGCGATACTTTCATTGATGCCATGAGTAGCGAAGGGGAAAACTACCAACTTCGTTCTTCTTTCTACACCAAAGCG
AGCCGAGAAAGTGGCTATCAGGCCGCAAAAAATGCGATTCAAAAAGGCGACAATTTAGCCTTCATGTACGCGTGTTCGAC
TGACGTGGCATTGGGTGCGACCGACGCGATCAAAGAACTTGGCAGAAATGACATAATTATCAACGGCTGGGGTGGTGGAA
GCGCTGAATTAGAAGCGATACAAAAAGGTGAATTGAATGTTACCATTATGAGAATGAACGATGATACAGGCGTTGCGATG
GCAGAGGCCATCAAAATGGATCTTGAAGACAAGACCGTACCTACCGTTTATTCCGGTGATTTTGAAATTGTCACCAGTCA
GGACAGTGAAGAAAGAATACAAGAGCTAAAATTACGTGCTTTCAGATATTCTGATTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.489

96.438

0.622

Multiple sequence alignment