Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNK08_RS16010 Genome accession   NZ_CP125983
Coordinates   2987300..2987944 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY04     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982300..2992944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS15975 (QNK08_16000) mrpB 2983492..2983923 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  QNK08_RS15980 (QNK08_16005) mrpC 2983923..2984264 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QNK08_RS15985 (QNK08_16010) mrpD 2984257..2985738 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  QNK08_RS15990 (QNK08_16015) mrpE 2985744..2986220 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QNK08_RS15995 (QNK08_16020) mrpF 2986220..2986504 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QNK08_RS16000 (QNK08_16025) mnhG 2986488..2986862 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  QNK08_RS16005 (QNK08_16030) yuxO 2986901..2987281 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  QNK08_RS16010 (QNK08_16035) comA 2987300..2987944 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QNK08_RS16015 (QNK08_16040) - 2988025..2989212 (-) 1188 Protein_3087 sensor histidine kinase -
  QNK08_RS16020 (QNK08_16045) - 2989543..2990790 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  QNK08_RS16025 (QNK08_16050) - 2990863..2991714 (-) 852 WP_410490122.1 hypothetical protein -
  QNK08_RS16030 (QNK08_16055) comX 2991730..2991951 (-) 222 WP_014480704.1 competence pheromone ComX -
  QNK08_RS16035 (QNK08_16060) - 2991953..2992816 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=834086 QNK08_RS16010 WP_003220716.1 2987300..2987944(-) (comA) [Bacillus subtilis strain ZKY04]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=834086 QNK08_RS16010 WP_003220716.1 2987300..2987944(-) (comA) [Bacillus subtilis strain ZKY04]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1