Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QNK08_RS14070 Genome accession   NZ_CP125983
Coordinates   2606080..2606826 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY04     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2601080..2611826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS14045 (QNK08_14075) mreC 2601486..2602358 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  QNK08_RS14050 (QNK08_14080) mreB 2602389..2603402 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QNK08_RS14055 (QNK08_14085) radC 2603494..2604189 (-) 696 WP_014480455.1 RadC family protein -
  QNK08_RS14060 (QNK08_14090) maf 2604226..2604795 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  QNK08_RS14065 (QNK08_14095) spoIIB 2604948..2605946 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  QNK08_RS14070 (QNK08_14100) comC 2606080..2606826 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  QNK08_RS14075 (QNK08_14105) folC 2606966..2608258 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  QNK08_RS14080 (QNK08_14110) valS 2608318..2610960 (-) 2643 WP_264379332.1 valine--tRNA ligase -
  QNK08_RS14085 (QNK08_14115) - 2611408..2611599 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=834081 QNK08_RS14070 WP_072592551.1 2606080..2606826(-) (comC) [Bacillus subtilis strain ZKY04]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=834081 QNK08_RS14070 WP_072592551.1 2606080..2606826(-) (comC) [Bacillus subtilis strain ZKY04]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996