Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | QNK08_RS13105 | Genome accession | NZ_CP125983 |
| Coordinates | 2438242..2438652 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain ZKY04 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2433608..2461538 | 2438242..2438652 | within | 0 |
Gene organization within MGE regions
Location: 2433608..2461538
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QNK08_RS13080 (QNK08_13090) | yqeF | 2433775..2434506 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| QNK08_RS13085 (QNK08_13095) | cwlH | 2434758..2435510 (-) | 753 | WP_264379321.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| QNK08_RS13090 (QNK08_13100) | yqeD | 2435697..2436323 (+) | 627 | WP_014480319.1 | TVP38/TMEM64 family protein | - |
| QNK08_RS13095 (QNK08_13105) | gnd | 2436342..2437235 (-) | 894 | WP_069837643.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| QNK08_RS13100 (QNK08_13110) | yqeB | 2437487..2438209 (+) | 723 | WP_014480321.1 | hypothetical protein | - |
| QNK08_RS13105 (QNK08_13115) | nucA/comI | 2438242..2438652 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| QNK08_RS13110 (QNK08_13120) | sigK | 2438848..2439576 (+) | 729 | WP_013308023.1 | RNA polymerase sporulation sigma factor SigK | - |
| QNK08_RS13115 (QNK08_13125) | - | 2439576..2439674 (+) | 99 | WP_031600702.1 | hypothetical protein | - |
| QNK08_RS13120 (QNK08_13130) | - | 2439671..2439883 (-) | 213 | Protein_2535 | recombinase family protein | - |
| QNK08_RS13125 (QNK08_13135) | fumC | 2440102..2441490 (-) | 1389 | WP_014480325.1 | class II fumarate hydratase | - |
| QNK08_RS13130 (QNK08_13140) | - | 2441657..2442547 (+) | 891 | WP_014480326.1 | LysR family transcriptional regulator | - |
| QNK08_RS13135 (QNK08_13145) | - | 2443489..2443884 (+) | 396 | WP_046160622.1 | VOC family protein | - |
| QNK08_RS13140 (QNK08_13155) | - | 2444624..2445751 (-) | 1128 | WP_014480328.1 | Rap family tetratricopeptide repeat protein | - |
| QNK08_RS13145 | - | 2445933..2446766 (+) | 834 | Protein_2540 | ribonuclease YeeF family protein | - |
| QNK08_RS13150 | - | 2447188..2447859 (+) | 672 | WP_228224803.1 | hypothetical protein | - |
| QNK08_RS13155 (QNK08_13165) | - | 2447873..2448160 (+) | 288 | WP_014480331.1 | hypothetical protein | - |
| QNK08_RS13160 (QNK08_13170) | - | 2448563..2449003 (+) | 441 | WP_014480332.1 | SMI1/KNR4 family protein | - |
| QNK08_RS13165 (QNK08_13175) | - | 2449102..2449554 (+) | 453 | WP_014480333.1 | SMI1/KNR4 family protein | - |
| QNK08_RS13170 (QNK08_13180) | cdiI | 2449651..2450010 (+) | 360 | WP_014480334.1 | ribonuclease toxin immunity protein CdiI | - |
| QNK08_RS13175 (QNK08_13185) | - | 2450115..2450594 (+) | 480 | WP_224588637.1 | hypothetical protein | - |
| QNK08_RS13180 (QNK08_13190) | - | 2450902..2451105 (-) | 204 | WP_123772462.1 | hypothetical protein | - |
| QNK08_RS13185 (QNK08_13195) | - | 2451194..2451427 (+) | 234 | WP_224588641.1 | hypothetical protein | - |
| QNK08_RS13190 (QNK08_13200) | atxG | 2451695..2452272 (+) | 578 | Protein_2549 | suppressor of fused domain protein | - |
| QNK08_RS13195 (QNK08_13205) | - | 2452382..2452672 (+) | 291 | WP_014480337.1 | contact-dependent growth inhibition system immunity protein | - |
| QNK08_RS13200 (QNK08_13210) | istA | 2453513..2455060 (+) | 1548 | WP_014480339.1 | IS21 family transposase | - |
| QNK08_RS13205 (QNK08_13215) | istB | 2455057..2455815 (+) | 759 | WP_014479891.1 | IS21-like element helper ATPase IstB | - |
| QNK08_RS13210 | - | 2456067..2456233 (-) | 167 | Protein_2553 | peptidoglycan-binding domain-containing protein | - |
| QNK08_RS13215 (QNK08_13225) | - | 2456408..2456494 (+) | 87 | WP_072592549.1 | putative holin-like toxin | - |
| QNK08_RS13220 | - | 2456781..2457256 (-) | 476 | Protein_2555 | phage tail tube protein | - |
| QNK08_RS13225 (QNK08_13240) | terS | 2457216..2457780 (-) | 565 | Protein_2556 | phage terminase small subunit | - |
| QNK08_RS13230 (QNK08_13245) | - | 2457907..2458212 (+) | 306 | WP_264379322.1 | hypothetical protein | - |
| QNK08_RS13235 (QNK08_13255) | - | 2458605..2459084 (-) | 480 | WP_014480344.1 | hypothetical protein | - |
| QNK08_RS13240 (QNK08_13260) | - | 2459701..2459967 (+) | 267 | WP_033881358.1 | hypothetical protein | - |
| QNK08_RS13245 (QNK08_13265) | - | 2460106..2460258 (-) | 153 | WP_049832653.1 | XtrA/YqaO family protein | - |
| QNK08_RS13250 (QNK08_13270) | - | 2460341..2460463 (-) | 123 | Protein_2561 | RusA family crossover junction endodeoxyribonuclease | - |
| QNK08_RS13255 (QNK08_13275) | - | 2460426..2460674 (-) | 249 | Protein_2562 | hypothetical protein | - |
| QNK08_RS13260 (QNK08_13280) | - | 2460819..2461049 (-) | 231 | WP_224588644.1 | hypothetical protein | - |
| QNK08_RS13265 (QNK08_13285) | - | 2461358..2461538 (-) | 181 | Protein_2564 | hypothetical protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=834077 QNK08_RS13105 WP_009967785.1 2438242..2438652(-) (nucA/comI) [Bacillus subtilis strain ZKY04]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=834077 QNK08_RS13105 WP_009967785.1 2438242..2438652(-) (nucA/comI) [Bacillus subtilis strain ZKY04]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |