Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QNK08_RS12855 Genome accession   NZ_CP125983
Coordinates   2394799..2395566 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain ZKY04     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2389799..2400566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS12835 (QNK08_12845) ppsR 2389974..2390786 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  QNK08_RS12840 (QNK08_12850) ccpN 2390812..2391450 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  QNK08_RS12845 (QNK08_12855) glyS 2391583..2393622 (-) 2040 WP_029317896.1 glycine--tRNA ligase subunit beta -
  QNK08_RS12850 (QNK08_12860) glyQ 2393615..2394502 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QNK08_RS12855 (QNK08_12865) recO 2394799..2395566 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  QNK08_RS12860 (QNK08_12870) yqzL 2395603..2395746 (-) 144 WP_003230053.1 YqzL family protein -
  QNK08_RS12865 (QNK08_12875) era 2395894..2396799 (-) 906 WP_003230051.1 GTPase Era -
  QNK08_RS12870 (QNK08_12880) - 2396780..2397190 (-) 411 WP_003230049.1 cytidine deaminase -
  QNK08_RS12875 (QNK08_12885) unpK 2397309..2397680 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  QNK08_RS12880 (QNK08_12890) ybeY 2397661..2398134 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  QNK08_RS12885 (QNK08_12895) pgpH 2398135..2400270 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=834073 QNK08_RS12855 WP_014477369.1 2394799..2395566(-) (recO) [Bacillus subtilis strain ZKY04]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=834073 QNK08_RS12855 WP_014477369.1 2394799..2395566(-) (recO) [Bacillus subtilis strain ZKY04]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996