Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNK08_RS12580 Genome accession   NZ_CP125983
Coordinates   2345893..2346963 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain ZKY04     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2340893..2351963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS12535 (QNK08_12545) tapA 2341372..2342133 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  QNK08_RS12540 (QNK08_12550) yqzG 2342405..2342731 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QNK08_RS12545 (QNK08_12555) spoIITA 2342773..2342952 (-) 180 WP_014480252.1 YqzE family protein -
  QNK08_RS12550 (QNK08_12560) comGG 2343023..2343397 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  QNK08_RS12555 (QNK08_12565) comGF 2343398..2343781 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  QNK08_RS12560 (QNK08_12570) comGE 2343807..2344154 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  QNK08_RS12565 (QNK08_12575) comGD 2344138..2344569 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  QNK08_RS12570 (QNK08_12580) comGC 2344559..2344855 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QNK08_RS12575 (QNK08_12585) comGB 2344869..2345906 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  QNK08_RS12580 (QNK08_12590) comGA 2345893..2346963 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QNK08_RS12585 (QNK08_12595) - 2347175..2347372 (-) 198 WP_014480259.1 CBS domain-containing protein -
  QNK08_RS12590 (QNK08_12600) corA 2347374..2348327 (-) 954 WP_014480260.1 magnesium transporter CorA -
  QNK08_RS12595 (QNK08_12605) yqhB 2348469..2349797 (+) 1329 WP_014480261.1 hemolysin family protein -
  QNK08_RS12600 (QNK08_12610) rsbRD 2349850..2350686 (-) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  QNK08_RS12610 (QNK08_12620) mgsR 2350910..2351290 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  QNK08_RS12615 (QNK08_12625) yqgY 2351522..2351767 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=834072 QNK08_RS12580 WP_004399124.1 2345893..2346963(-) (comGA) [Bacillus subtilis strain ZKY04]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=834072 QNK08_RS12580 WP_004399124.1 2345893..2346963(-) (comGA) [Bacillus subtilis strain ZKY04]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1