Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QNK08_RS12325 Genome accession   NZ_CP125983
Coordinates   2304910..2305713 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY04     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2299910..2310713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS12300 (QNK08_12310) glpQB 2301048..2301779 (-) 732 WP_043857797.1 glycerophosphodiester phosphodiesterase -
  QNK08_RS12305 (QNK08_12315) yqiI 2301858..2302478 (-) 621 WP_087614617.1 N-acetylmuramoyl-L-alanine amidase -
  QNK08_RS12310 (QNK08_12320) - 2302498..2302794 (-) 297 WP_014480225.1 hypothetical protein -
  QNK08_RS12315 (QNK08_12325) - 2303102..2303254 (+) 153 WP_121590947.1 hypothetical protein -
  QNK08_RS12320 (QNK08_12330) yqiG 2303327..2304445 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  QNK08_RS12325 (QNK08_12335) spo0A 2304910..2305713 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QNK08_RS12330 (QNK08_12340) spoIVB 2305989..2307269 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  QNK08_RS12335 (QNK08_12345) recN 2307444..2309174 (-) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  QNK08_RS12340 (QNK08_12350) argR 2309211..2309660 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QNK08_RS12345 (QNK08_12355) yqxC 2309758..2310603 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=834062 QNK08_RS12325 WP_003226427.1 2304910..2305713(-) (spo0A) [Bacillus subtilis strain ZKY04]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=834062 QNK08_RS12325 WP_003226427.1 2304910..2305713(-) (spo0A) [Bacillus subtilis strain ZKY04]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1