Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNK08_RS11210 Genome accession   NZ_CP125983
Coordinates   2108010..2108630 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY04     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2103010..2113630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS11170 (QNK08_11185) ptsA 2104141..2104647 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  QNK08_RS11175 (QNK08_11190) ypqA 2104785..2105204 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  QNK08_RS11180 (QNK08_11195) sppG 2105225..2105602 (-) 378 WP_264379304.1 YppG family protein -
  QNK08_RS11185 (QNK08_11200) yppF 2105790..2105978 (+) 189 WP_003230690.1 YppF family protein -
  QNK08_RS11190 (QNK08_11205) yppE 2106017..2106388 (-) 372 WP_003246080.1 YppE family protein -
  QNK08_RS11195 (QNK08_11210) yppD 2106434..2106679 (-) 246 WP_004398488.1 YppD family protein -
  QNK08_RS11200 (QNK08_11215) sspM 2106878..2106982 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QNK08_RS11205 (QNK08_11220) yppC 2107007..2107969 (-) 963 WP_264379305.1 DUF2515 domain-containing protein -
  QNK08_RS11210 (QNK08_11225) recU 2108010..2108630 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QNK08_RS11215 (QNK08_11230) ponA 2108652..2111402 (+) 2751 WP_264379306.1 PBP1A family penicillin-binding protein -
  QNK08_RS11220 (QNK08_11235) ypoC 2111477..2111971 (-) 495 WP_041849962.1 YpoC family protein -
  QNK08_RS11225 (QNK08_11240) nth 2111968..2112627 (-) 660 WP_009967580.1 endonuclease III -
  QNK08_RS11230 (QNK08_11245) dnaD 2112646..2113344 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=834061 QNK08_RS11210 WP_004399067.1 2108010..2108630(+) (recU) [Bacillus subtilis strain ZKY04]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=834061 QNK08_RS11210 WP_004399067.1 2108010..2108630(+) (recU) [Bacillus subtilis strain ZKY04]
GTGATTCGGTACCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCGCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1