Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QNK08_RS08045 Genome accession   NZ_CP125983
Coordinates   1517752..1518327 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY04     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512752..1523327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS08015 (QNK08_08030) dapD 1512940..1513650 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QNK08_RS08020 (QNK08_08035) dapI 1513720..1514844 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  QNK08_RS08025 (QNK08_08040) ykuS 1514906..1515151 (+) 246 WP_003232382.1 YkuS family protein -
  QNK08_RS08030 (QNK08_08045) mscT 1515188..1515991 (-) 804 WP_029317733.1 small-conductance mechanosensitive channel protein MscT -
  QNK08_RS08035 (QNK08_08050) ahpA 1516228..1516770 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  QNK08_RS08040 (QNK08_08055) ykuV 1516840..1517286 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  QNK08_RS08045 (QNK08_08060) rok 1517752..1518327 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  QNK08_RS08050 (QNK08_08065) cse15 1518368..1519333 (-) 966 WP_029317734.1 spore protein Cse15 -
  QNK08_RS08055 (QNK08_08070) mobA 1519470..1520069 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  QNK08_RS08060 (QNK08_08075) moeB 1520120..1521139 (+) 1020 WP_029317735.1 molybdopterin-synthase adenylyltransferase MoeB -
  QNK08_RS08065 (QNK08_08080) glp 1521157..1522449 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  QNK08_RS08070 (QNK08_08085) mobB 1522410..1522931 (+) 522 WP_046160345.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=834055 QNK08_RS08045 WP_003232378.1 1517752..1518327(+) (rok) [Bacillus subtilis strain ZKY04]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=834055 QNK08_RS08045 WP_003232378.1 1517752..1518327(+) (rok) [Bacillus subtilis strain ZKY04]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1