Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QNK08_RS07945 Genome accession   NZ_CP125983
Coordinates   1501904..1502368 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain ZKY04     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496904..1507368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS07925 (QNK08_07940) kinA 1497371..1499191 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  QNK08_RS07930 (QNK08_07945) dapX 1499201..1500382 (-) 1182 WP_101172463.1 aminotransferase A -
  QNK08_RS07935 (QNK08_07950) - 1500584..1500745 (-) 162 WP_003245246.1 hypothetical protein -
  QNK08_RS07940 (QNK08_07955) cheV 1500949..1501860 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  QNK08_RS07945 (QNK08_07960) kre 1501904..1502368 (-) 465 WP_003232406.1 YkyB family protein Regulator
  QNK08_RS07950 (QNK08_07965) ykuC 1502494..1503786 (-) 1293 WP_014479656.1 MFS transporter -
  QNK08_RS07955 (QNK08_07970) ltdD 1503862..1504356 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  QNK08_RS07960 (QNK08_07975) ppeE 1504413..1505273 (-) 861 WP_003232400.1 metallophosphoesterase -
  QNK08_RS07965 (QNK08_07980) fadH 1505416..1506180 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=834054 QNK08_RS07945 WP_003232406.1 1501904..1502368(-) (kre) [Bacillus subtilis strain ZKY04]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=834054 QNK08_RS07945 WP_003232406.1 1501904..1502368(-) (kre) [Bacillus subtilis strain ZKY04]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1