Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNK08_RS05865 Genome accession   NZ_CP125983
Coordinates   1126192..1126770 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain ZKY04     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121192..1131770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS05840 - 1121712..1122227 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  QNK08_RS05845 - 1122468..1123094 (-) 627 Protein_1085 protoglobin domain-containing protein -
  QNK08_RS05850 (QNK08_05850) comW 1123149..1124677 (-) 1529 Protein_1086 FAD-dependent oxidoreductase -
  QNK08_RS05855 (QNK08_05855) yhxC 1124781..1125638 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  QNK08_RS05860 (QNK08_05860) yhzC 1125666..1125899 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QNK08_RS05865 (QNK08_05865) comK 1126192..1126770 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  QNK08_RS05870 (QNK08_05870) yhxD 1126815..1127714 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  QNK08_RS05875 (QNK08_05875) yhjA 1127931..1128200 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  QNK08_RS05880 (QNK08_05880) yhjB 1128244..1129713 (-) 1470 WP_014479374.1 sodium:solute symporter -
  QNK08_RS05885 (QNK08_05885) yhjC 1129710..1129910 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QNK08_RS05890 (QNK08_05890) - 1130109..1130480 (-) 372 WP_014476361.1 hypothetical protein -
  QNK08_RS05895 (QNK08_05895) yhjE 1130632..1131255 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  QNK08_RS05900 (QNK08_05900) lepB 1131257..1131763 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=834042 QNK08_RS05865 WP_003245329.1 1126192..1126770(+) (comK) [Bacillus subtilis strain ZKY04]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=834042 QNK08_RS05865 WP_003245329.1 1126192..1126770(+) (comK) [Bacillus subtilis strain ZKY04]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1