Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   U2S88_RS05915 Genome accession   NZ_CP140346
Coordinates   1140075..1140569 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC039261     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135075..1145569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S88_RS05900 (U2S88_05925) - 1136461..1137639 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  U2S88_RS05905 (U2S88_05930) gpsA 1137649..1138545 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  U2S88_RS05910 (U2S88_05935) gatB 1138542..1139960 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  U2S88_RS05915 (U2S88_05940) luxS 1140075..1140569 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  U2S88_RS05920 (U2S88_05945) - 1140880..1141872 (+) 993 WP_002867376.1 isopenicillin N synthase family oxygenase -
  U2S88_RS05925 (U2S88_05950) - 1141883..1142653 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  U2S88_RS05930 (U2S88_05955) metE 1142665..1144929 (+) 2265 WP_070290374.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=833992 U2S88_RS05915 WP_002859279.1 1140075..1140569(+) (luxS) [Campylobacter jejuni strain PNUSAC039261]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=833992 U2S88_RS05915 WP_002859279.1 1140075..1140569(+) (luxS) [Campylobacter jejuni strain PNUSAC039261]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713