Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8568_RS05060 Genome accession   NZ_AP026931
Coordinates   1000297..1001367 (-) Length   356 a.a.
NCBI ID   WP_000817884.1    Uniprot ID   C1C7D0
Organism   Streptococcus pneumoniae strain PZ900701541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995297..1006367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8568_RS05045 (PC1520_10110) - 996379..997422 (+) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -
  R8568_RS05050 (PC1520_10120) lpdA 997468..999171 (+) 1704 WP_001162928.1 dihydrolipoyl dehydrogenase -
  R8568_RS05055 (PC1520_10130) - 999235..1000224 (+) 990 WP_000873991.1 lipoate--protein ligase -
  R8568_RS05060 (PC1520_10140) xerS 1000297..1001367 (-) 1071 WP_000817884.1 tyrosine recombinase XerS Machinery gene
  R8568_RS05065 (PC1520_10150) - 1001951..1003501 (-) 1551 WP_000392545.1 ClC family H(+)/Cl(-) exchange transporter -
  R8568_RS05070 (PC1520_10160) - 1003517..1004296 (-) 780 WP_000201133.1 ribonuclease HII -
  R8568_RS05075 (PC1520_10170) ylqF 1004283..1005134 (-) 852 WP_000201300.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41144.18 Da        Isoelectric Point: 9.6220

>NTDB_id=83398 R8568_RS05060 WP_000817884.1 1000297..1001367(-) (xerS) [Streptococcus pneumoniae strain PZ900701541]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=83398 R8568_RS05060 WP_000817884.1 1000297..1001367(-) (xerS) [Streptococcus pneumoniae strain PZ900701541]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1C7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997