Detailed information NTG0833962

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: SR852_RS20300
• Genome accession: NZ_CP140161
• Coordinates: 3905802..3906920 (-)
• Length: 372 a.a.
• NCBI ID: WP_003179978.1
• Uniprot ID: Q65M68
• Organism: Bacillus licheniformis strain ATCC 14580
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3900802..3911920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR852_RS20285 (SR852_20285)	aroD	3902067..3902831 (-)	765	WP_003179983.1	type I 3-dehydroquinate dehydratase	-
SR852_RS20290 (SR852_20290)	-	3903219..3903437 (-)	219	WP_003179982.1	hypothetical protein	-
SR852_RS20295 (SR852_20295)	-	3903684..3905009 (-)	1326	WP_009329004.1	TGS domain-containing protein	-
SR852_RS20300 (SR852_20300)	rapC	3905802..3906920 (-)	1119	WP_003179978.1	Rap family tetratricopeptide repeat protein	Regulator
SR852_RS20305 (SR852_20305)	-	3907246..3908805 (+)	1560	WP_011197679.1	T7SS effector LXG polymorphic toxin	-
SR852_RS20310 (SR852_20310)	-	3908822..3909262 (+)	441	WP_009329006.1	DUF6756 family protein	-
SR852_RS20315 (SR852_20315)	-	3909493..3909789 (-)	297	WP_011201595.1	DUF3800 domain-containing protein	-
SR852_RS20320 (SR852_20320)	-	3910055..3911779 (+)	1725	WP_003179977.1	T7SS effector LXG polymorphic toxin	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 43946.57 Da
• Isoelectric Point: 6.5966

>NTDB_id=833962 SR852_RS20300 WP_003179978.1 3905802..3906920(-) (rapC) [Bacillus licheniformis strain ATCC 14580]
METIPSSEVGIKINRWYNEIQKLNVIEAERLKAEVHLAIERMEEDQDLLSYYQLMNFRHELMLEYLFPAEKKLSKSDYLR
EIEGQGRKLSGLLEYYFSFFTGMYHFSRGKYIKAIKAYRAAEKKLTKVSDKIEKAEFYYKMAEVFYHMKQTHMSMYYVSL
AYDIYKSYDAYVIRRINCLFVVAGNYIDLSTHDQALPHLLSAKESAEDIQNKAIVAKALLNVAYCYNAMERPTKAIEYFH
KAIDVAKEIKAKELTQAYYDLALIHFRNNENIEGRKFYEKALESARVFEDELFLCLLDVLEALFIKSANKSEVLETMKPL
RDSRGYPYLEELALEAALFYTRNERPNDSIFFYDQMVQAQKQIKRGDFLYEI

Nucleotide

• Length: 1119 bp

>NTDB_id=833962 SR852_RS20300 WP_003179978.1 3905802..3906920(-) (rapC) [Bacillus licheniformis strain ATCC 14580]
TTGGAGACTATCCCGTCTTCAGAAGTTGGAATCAAAATAAACCGCTGGTACAACGAAATTCAAAAATTAAACGTAATAGA
AGCAGAACGATTAAAGGCGGAAGTTCACTTAGCTATAGAAAGAATGGAAGAAGATCAGGACTTGCTTTCCTATTATCAGC
TTATGAATTTTAGACATGAGTTAATGTTGGAATATCTTTTCCCGGCAGAAAAAAAGCTGAGCAAATCTGATTATCTTAGG
GAAATTGAGGGACAGGGAAGAAAATTGTCAGGCTTGCTCGAATACTATTTTTCCTTTTTCACCGGAATGTATCATTTTTC
TCGCGGAAAATACATAAAGGCAATCAAGGCATATAGAGCAGCAGAAAAAAAGTTGACGAAAGTTTCAGATAAAATAGAAA
AGGCTGAATTCTATTATAAGATGGCGGAAGTGTTTTATCATATGAAACAGACTCATATGTCAATGTATTATGTGTCTCTC
GCTTATGATATTTATAAATCCTATGATGCATATGTGATTCGAAGAATTAATTGTCTATTCGTTGTTGCTGGGAATTACAT
TGATTTATCAACCCATGATCAAGCTTTACCGCATCTTTTAAGCGCTAAGGAATCCGCGGAAGACATTCAAAACAAGGCGA
TCGTTGCAAAGGCTCTTTTAAATGTAGCATATTGTTATAATGCAATGGAGAGACCAACAAAAGCTATTGAATACTTTCAT
AAGGCGATTGATGTAGCAAAGGAAATAAAGGCAAAAGAACTGACTCAGGCTTATTATGATTTGGCATTAATTCACTTTCG
AAATAACGAAAATATTGAAGGACGAAAATTTTATGAAAAGGCGCTTGAAAGTGCGCGGGTATTTGAAGATGAATTATTCC
TGTGTCTGTTGGATGTTTTAGAGGCACTGTTTATAAAATCAGCTAATAAGTCAGAGGTACTAGAAACAATGAAACCATTA
CGGGATAGTCGTGGTTACCCCTATCTTGAGGAACTGGCATTAGAAGCAGCTCTATTCTATACTAGGAATGAGCGGCCAAA
TGATTCCATATTTTTTTATGATCAGATGGTGCAGGCTCAGAAACAAATCAAAAGGGGCGACTTTCTGTATGAAATCTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (215-285)

3D structure

• AlphaFold DB: Q65M68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.5	100	0.379
rapF	Bacillus subtilis subsp. subtilis str. 168	36.702	100	0.371