Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   SR852_RS19160 Genome accession   NZ_CP140161
Coordinates   3671171..3674563 (-) Length   1130 a.a.
NCBI ID   WP_011197745.1    Uniprot ID   Q65LJ7
Organism   Bacillus licheniformis strain ATCC 14580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3666171..3679563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS19110 (SR852_19110) cotG 3666545..3667051 (-) 507 WP_009328889.1 spore coat protein CotG -
  SR852_RS19115 (SR852_19115) - 3667217..3668290 (+) 1074 WP_011197748.1 CotH kinase family protein -
  SR852_RS19120 (SR852_19120) - 3668457..3668636 (+) 180 WP_011197747.1 aspartyl-phosphate phosphatase Spo0E family protein -
  SR852_RS19125 (SR852_19125) - 3668718..3669011 (-) 294 WP_011197746.1 DUF3784 domain-containing protein -
  SR852_RS19130 (SR852_19130) - 3669193..3669414 (+) 222 WP_003180445.1 spore germination protein -
  SR852_RS19135 (SR852_19135) - 3669426..3669668 (+) 243 WP_003180443.1 spore germination protein GerPB -
  SR852_RS19140 (SR852_19140) - 3669689..3670294 (+) 606 WP_009328892.1 spore germination protein GerPC -
  SR852_RS19145 (SR852_19145) - 3670291..3670470 (+) 180 WP_009328893.1 germination protein GerPD -
  SR852_RS19150 (SR852_19150) - 3670467..3670853 (+) 387 WP_009328894.1 spore germination protein GerPE -
  SR852_RS19155 (SR852_19155) - 3670909..3671127 (+) 219 WP_009328895.1 spore germination protein -
  SR852_RS19160 (SR852_19160) sbcC 3671171..3674563 (-) 3393 WP_011197745.1 exonuclease subunit SbcC Machinery gene
  SR852_RS19165 (SR852_19165) sbcD 3674560..3675741 (-) 1182 WP_011197744.1 exonuclease subunit SbcD -
  SR852_RS19170 (SR852_19170) addA 3675806..3679498 (-) 3693 WP_011197743.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 129087.79 Da        Isoelectric Point: 5.4247

>NTDB_id=833950 SR852_RS19160 WP_011197745.1 3671171..3674563(-) (sbcC) [Bacillus licheniformis strain ATCC 14580]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQSRKNEMLAEQAGLGDAGEEALKLAEQHLEEAETLLQSKRRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKKEQIREKESRLHLAETANTLKPYADAFLAAREDAERALREEKQAREQLEQY
EELHKKTECEYENFRRHKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRKANQLAFHIQQLNSDAALEKKRLDQQEALIKELRQEQQAVDQKVKDETERIQALF
AAVERAYALVCETDRSLSETVRLATQKKEEIVAKRKQANRDQLAIELAKQLKEGEPCPVCGSVHHEMPAGVGTESPSFKE
TESELEKTEAIIAEAGALAQEFLSAKVALEQQSGHLMSECPFLVKSKHELPETAASLEEGTIPERFSRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKEQNRLQNRVRELNDELNERQKSFGEQFGGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVEFLTEHEQQKEKLTERLFALDKEKLDLHYAVESLKKDINDYQKELTGYPDTAAIDEKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKAGGTPFEKASEVKASILDRDELSRLKEDIQ
LYWDHTKQCESNIKRITEKLDGRSVSEENWEKAAVTKDQAEEAFSKALEERGAAGKALAVIRENHKRFKELETSLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=833950 SR852_RS19160 WP_011197745.1 3671171..3674563(-) (sbcC) [Bacillus licheniformis strain ATCC 14580]
ATGAAGCCGATTTCTCTGTCTATTAAGGGCCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGCATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGATGCGATGACTCTTGCTTTGTACG
GGAAAGTGGAGCGGGCCGCCAATAATACGCACGGCATTTTGAACCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGACGCCGTCAAGGTCAAAACGTC
GATATGCCGCTTTATTGAAATGAAAGAGGAACAAATCGTCCTGGCCGATAAAGCGAATGAAGTAAACCGAAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGAAAATTCGCCGAATTTCTTTCCTTG
AAAGGAGCGGAGCGAAGGCAGATGCTTCAGCGCCTGTTCAACCTTGAACAATACGGGGACAGGCTCGTCAAAAAACTAAA
GAAACAGGCGCAAACAGCTCAGTCCAGAAAAAACGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAGCTGGCGGAACAGCATCTCGAAGAAGCCGAAACCCTTTTGCAAAGCAAGAGGCGCGAACGAGATGCGGAAGCG
CAGCGCTTTGCGGAGTACCAGGAAATTTGGAATCTGCAGCAAGAAAAAGAAAGCTATCTAAAAAAAGAGGCGGAGCTTTT
AAAGAAAAAGGAACAGATCCGGGAAAAAGAAAGCCGCCTGCATCTCGCTGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTTCTGGCAGCGCGGGAAGATGCCGAGCGCGCACTTCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAC
GAAGAGCTTCATAAAAAAACAGAGTGCGAGTACGAGAATTTCAGGCGTCATAAAAATGAAAAAGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTTGCCGCACAGGCAGAAGCTGAGAAAAAGCAGC
GGGAACAGCGCTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAACTGGCCAAGGTGAAAAGCCTGCTTGAACGCGGG
ACAGCCAAGCAAAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCCAGCGAAGAGCGCAAAAACTGCCGGAAGGC
CAATCAGCTTGCTTTTCACATTCAGCAGCTTAACAGCGATGCCGCTTTAGAAAAAAAACGGCTCGATCAGCAGGAGGCGC
TGATCAAAGAGCTCCGGCAAGAACAGCAAGCGGTGGATCAGAAGGTGAAGGATGAAACCGAACGCATCCAGGCATTGTTT
GCCGCTGTCGAACGAGCGTATGCGCTCGTTTGCGAAACGGACAGATCGCTCTCTGAGACCGTCCGTCTCGCGACTCAAAA
GAAAGAAGAGATTGTCGCAAAACGGAAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGAGG
GTGAGCCTTGTCCGGTCTGCGGGTCTGTACATCATGAAATGCCCGCGGGTGTCGGTACGGAAAGCCCGTCCTTTAAAGAG
ACGGAATCCGAACTGGAGAAAACGGAAGCCATCATCGCAGAAGCCGGCGCGCTGGCTCAGGAGTTTCTCTCAGCCAAAGT
GGCGCTCGAACAGCAGTCCGGCCACCTGATGAGCGAATGCCCGTTTTTAGTCAAAAGCAAACACGAACTGCCTGAAACTG
CTGCATCGCTAGAAGAAGGCACCATTCCCGAACGGTTCAGCCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCCGAGACAAAAAGCCGGATGTCAAAGCTCCTTCACACATATAAAGAGCTCTGCAAAAAACGCGACCAAATCAGCGAACG
CCTCAGCCATGAAGAAAAAGAGCAAAACAGGCTTCAAAACCGCGTCCGCGAATTGAATGACGAGTTAAATGAACGCCAAA
AAAGCTTCGGCGAACAATTCGGCGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGAATCGAAACGAGCGTCGAATTTCTCACGGAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTTGACCTTCATTATGCGGTCGAAAGCCTCAAAAAAGACATAAACGATT
ATCAAAAAGAGCTGACGGGCTATCCCGATACAGCTGCGATCGACGAAAAGCTTCAAGACGTGAAAACGCAGTTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAGGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACTAA
AGGGTGTGAGCTCGCTTTGCGCGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAAGCCGGAGGCA
CACCGTTCGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTGGACCGCGATGAGCTTTCCCGGCTGAAAGAAGACATTCAA
CTGTATTGGGATCACACAAAGCAGTGCGAGTCCAATATCAAGCGAATTACGGAAAAGCTTGACGGCAGATCTGTTTCTGA
AGAGAATTGGGAAAAAGCCGCAGTCACGAAGGACCAGGCGGAGGAGGCATTCAGCAAAGCTCTAGAGGAAAGGGGAGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAGCTTGAAACATCGTTGGCTGAATGGCAGACA
TACATCGACCGCCTTGATAAGCTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGAGAACTGACAAGGCAGCGGTATGCAATTGAAGTCGACTCAGAAGGCG
GCTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGCGGGGAGACATTTCTGACT
TCGCTTGCGCTGGCGCTTGCACTCTCGGCGCAGATTCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGATTTGGCACGCTGGATCAGGATTTGCTGGATACGGTCGTGACTGCGTTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCATGTTCAGGAACTTCGGGCAAGGCTGCCGAAAAAGCTGATTGTGCATCCGGCTGAACCAAGCGGC
AAAGGTACAGCCGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

P-loop containing region of AAA domain (AAA_29)

(13-61)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65LJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.549

100

0.565