Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QNK07_RS18405 Genome accession   NZ_CP125981
Coordinates   3539193..3539882 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain ZKY06     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3534193..3544882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS18370 (QNK07_18390) flgN 3534374..3534856 (-) 483 WP_032722609.1 flagellar protein FlgN -
  QNK07_RS18375 (QNK07_18395) flgM 3534872..3535138 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNK07_RS18380 (QNK07_18400) yvyF 3535219..3535638 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QNK07_RS18385 (QNK07_18405) comFC 3535711..3536433 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QNK07_RS18390 (QNK07_18410) comFB 3536397..3536693 (-) 297 WP_015483764.1 late competence protein ComFB -
  QNK07_RS18395 (QNK07_18415) comFA 3536753..3538144 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  QNK07_RS18400 (QNK07_18420) fakBA 3538250..3539095 (-) 846 WP_003244125.1 DegV family protein -
  QNK07_RS18405 (QNK07_18425) degU 3539193..3539882 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNK07_RS18410 (QNK07_18430) degS 3539965..3541122 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QNK07_RS18415 (QNK07_18435) yvyE 3541339..3541992 (+) 654 WP_003227979.1 YigZ family protein -
  QNK07_RS18420 (QNK07_18440) tagV 3541992..3543167 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  QNK07_RS18425 (QNK07_18445) tagO 3543240..3544316 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=833938 QNK07_RS18405 WP_003219701.1 3539193..3539882(-) (degU) [Bacillus subtilis strain ZKY06]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=833938 QNK07_RS18405 WP_003219701.1 3539193..3539882(-) (degU) [Bacillus subtilis strain ZKY06]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1