Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VNTUMSATTG_RS16100 Genome accession   NZ_AP024087
Coordinates   3522447..3522965 (-) Length   172 a.a.
NCBI ID   WP_004408881.1    Uniprot ID   A0AAV2VQN8
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517447..3527965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS16085 (VNTUMSATTG_31500) - 3518811..3519605 (+) 795 WP_004408885.1 inner membrane protein YpjD -
  VNTUMSATTG_RS16090 (VNTUMSATTG_31510) - 3519702..3520964 (+) 1263 WP_004408884.1 HlyC/CorC family transporter -
  VNTUMSATTG_RS16095 (VNTUMSATTG_31520) - 3521168..3522397 (+) 1230 WP_200766166.1 YbiU family protein -
  VNTUMSATTG_RS16100 (VNTUMSATTG_31530) luxS 3522447..3522965 (-) 519 WP_004408881.1 S-ribosylhomocysteine lyase Regulator
  VNTUMSATTG_RS16105 (VNTUMSATTG_31540) - 3522990..3523595 (-) 606 WP_004408878.1 hypothetical protein -
  VNTUMSATTG_RS16110 (VNTUMSATTG_31550) gshA 3523601..3525169 (-) 1569 WP_200766167.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18892.68 Da        Isoelectric Point: 4.5235

>NTDB_id=83391 VNTUMSATTG_RS16100 WP_004408881.1 3522447..3522965(-) (luxS) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSETGIHTLEHLYAGFMRKHLNGADIEIIDISP
MGCRTGFYMSLIGTPVESQVAEAWLAAMQDVLKVESQDQIPELNEYQCGTAAMHSLDEAKEIATAIIEAGISVNKNEDLA
LPESMLKELSVK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=83391 VNTUMSATTG_RS16100 WP_004408881.1 3522447..3522965(-) (luxS) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGCCATTACTAGATAGTTTTACCGTTGATCACACCAAGATGAATGCTCCTGCCGTTCGTGTGGCAAAGACCATGCAAAC
GCCAAAAGGGGATACGATTACCGTTTTTGATCTTCGTTTTACGGCACCTAACAAAGACATTCTGTCTGAGACGGGCATCC
ATACACTTGAGCACCTGTACGCAGGTTTCATGCGTAAACATCTGAATGGCGCTGATATCGAAATCATTGATATTTCACCA
ATGGGTTGTCGTACTGGTTTCTACATGAGTCTTATCGGCACGCCTGTTGAATCTCAAGTGGCAGAAGCATGGCTTGCAGC
TATGCAAGATGTGTTAAAAGTTGAAAGTCAGGATCAGATCCCCGAGCTGAACGAATACCAGTGCGGTACTGCTGCGATGC
ACTCTCTGGATGAAGCAAAAGAGATTGCAACAGCAATTATCGAAGCAGGAATTTCGGTAAACAAAAATGAAGATCTTGCG
CTACCAGAATCTATGCTGAAAGAGCTGAGCGTGAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment