Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QNK07_RS07890 Genome accession   NZ_CP125981
Coordinates   1493563..1494027 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain ZKY06     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488563..1499027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS07870 (QNK07_07890) kinA 1489030..1490850 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  QNK07_RS07875 (QNK07_07895) dapX 1490860..1492041 (-) 1182 WP_015252196.1 aminotransferase A -
  QNK07_RS07880 (QNK07_07900) - 1492243..1492404 (-) 162 WP_003245246.1 hypothetical protein -
  QNK07_RS07885 (QNK07_07905) cheV 1492608..1493519 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  QNK07_RS07890 (QNK07_07910) kre 1493563..1494027 (-) 465 WP_003232406.1 YkyB family protein Regulator
  QNK07_RS07895 (QNK07_07915) ykuC 1494153..1495445 (-) 1293 WP_017697269.1 MFS transporter -
  QNK07_RS07900 (QNK07_07920) ltdD 1495521..1496015 (-) 495 WP_072557193.1 L,D-transpeptidase family protein -
  QNK07_RS07905 (QNK07_07925) ppeE 1496072..1496932 (-) 861 WP_032721462.1 metallophosphoesterase -
  QNK07_RS07910 (QNK07_07930) fadH 1497075..1497839 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=833899 QNK07_RS07890 WP_003232406.1 1493563..1494027(-) (kre) [Bacillus subtilis strain ZKY06]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=833899 QNK07_RS07890 WP_003232406.1 1493563..1494027(-) (kre) [Bacillus subtilis strain ZKY06]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAGCCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1