Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SR852_RS04670 Genome accession   NZ_CP140161
Coordinates   954787..955425 (-) Length   212 a.a.
NCBI ID   WP_003186252.1    Uniprot ID   Q65DI5
Organism   Bacillus licheniformis strain ATCC 14580     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 949787..960425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS04655 (SR852_04655) - 950233..951564 (+) 1332 WP_003186259.1 MFS transporter -
  SR852_RS04660 (SR852_04660) - 951659..952399 (+) 741 WP_011198419.1 TIGR02206 family membrane protein -
  SR852_RS04665 (SR852_04665) - 952496..954670 (-) 2175 WP_011198418.1 MMPL family transporter -
  SR852_RS04670 (SR852_04670) vraR 954787..955425 (-) 639 WP_003186252.1 response regulator Regulator
  SR852_RS04675 (SR852_04675) - 955418..956641 (-) 1224 WP_011198417.1 sensor histidine kinase -
  SR852_RS04680 (SR852_04680) - 956911..957081 (+) 171 WP_003186246.1 hypothetical protein -
  SR852_RS04685 (SR852_04685) - 957078..957254 (+) 177 WP_085959885.1 hypothetical protein -
  SR852_RS04690 (SR852_04690) - 957376..958239 (+) 864 WP_003186243.1 glycosyltransferase family 8 protein -
  SR852_RS04695 (SR852_04695) - 958387..958683 (+) 297 WP_223307126.1 hypothetical protein -
  SR852_RS04700 (SR852_04700) - 958705..959325 (+) 621 WP_223307064.1 NAD(P)-dependent oxidoreductase -
  SR852_RS04705 (SR852_04705) - 959356..959736 (-) 381 WP_003186240.1 VOC family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23718.78 Da        Isoelectric Point: 6.0356

>NTDB_id=833849 SR852_RS04670 WP_003186252.1 954787..955425(-) (vraR) [Bacillus licheniformis strain ATCC 14580]
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEMSGLEAIKLIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD

Nucleotide


Download         Length: 639 bp        

>NTDB_id=833849 SR852_RS04670 WP_003186252.1 954787..955425(-) (vraR) [Bacillus licheniformis strain ATCC 14580]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCACTA
CATCATCATAGGAGAGGCGGAAAATGGCAAAGCAGCAGTTCGCCTTGCAGATGAATTAAAACCGGATATTATTCTCATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAAGCCATTAAACTAATAAAAGAAAAACACGACATCCCCATCATTATTTTG
ACTACGTATAATGAAGATCACTTAATGATCGAAGGAATTGAATTAGGGGCGAAAGGATATCTATTGAAGGATACAAGTTC
AGAAACCCTTTTTCATACGATGGACGCAGCAATAAGAGGAAACGTGCTATTGCAGCCTGATATCTTAAAACGTCTGCAAG
AAATCCAATTGGAGCGGATGAAGAAGCAGAGCAGTGATACGCAGCTGACAGAAAAGGAAGTCATAGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGAGAACAGTAAAGTCTAGACTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAAGCAGTGACGATTGCCATGCAAAGAGGCGTTCTGACATTAGACTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65DI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.528

0.363